Pre_GI: BLASTP Hits

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Query: NC_007951:2904644:2940441 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2940441, End: 2941934, Length: 1494

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007951:1971584:1985835198583519873281494Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase integrase protein0887
NC_007951:4741620:4756244475624447577371494Burkholderia xenovorans LB400 chromosome 1, complete sequenceputative transposase with integrase domain0887
NC_016590:1183470:1188216118821611897151500Burkholderia sp. YI23 chromosome 3, complete sequenceintegrase catalytic subunit0785
NC_016626:1781956:1785372178537217868711500Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase, IS21 family0784
NC_007925:1085500:1100823110082311023161494Rhodopseudomonas palustris BisB18, complete genomeIntegrase, catalytic region1e-144513
NC_012791:2832001:2846754284675428482471494Variovorax paradoxus S110 chromosome 1, complete genometransposase2e-143509
NC_006513:148950:1583071583071598031497Azoarcus sp. EbN1, complete genometransposase2e-137489
NC_004463:5540924:5543986554398655455361551Bradyrhizobium japonicum USDA 110, complete genomeputative transposase4e-137488
NC_004463:1872537:1871026187102618725761551Bradyrhizobium japonicum USDA 110, complete genomeputative transposase4e-137488
NC_011206:2019577:2031455203145520329391485Acidithiobacillus ferrooxidans ATCC 53993, complete genomeIntegrase catalytic region7e-133474
NC_016585:1004000:1024581102458110260561476Azospirillum lipoferum 4B plasmid AZO_p1, complete sequenceTransposase of ISAli13, IS21 family, ORFA6e-130464
NC_015186:2197236:2198803219880322003051503Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element3e-128458
NC_008686:405159:4312344312344327511518Paracoccus denitrificans PD1222 chromosome 1, complete sequenceIntegrase, catalytic region1e-125450
NC_009467:117812:1334651334651349941530Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequenceintegrase catalytic subunit1e-125450
NC_016626:1669477:1669477166947716709581482Burkholderia sp. YI23 plasmid byi_1p, complete sequenceISBmu7a transposase2e-124446
NC_003047:3360000:3395946339594633974601515Sinorhizobium meliloti 1021, complete genomePUTATIVE TRANSPOSASE NUMBER 1 FOR INSERTION SEQUENCE ISRM274e-123442
NC_017325:1897500:1911800191180019133081509Sinorhizobium meliloti SM11 chromosome, complete genometransposase3e-122439
NC_010087:376918:4234224234224249361515Burkholderia multivorans ATCC 17616 chromosome 3, completeIntegrase catalytic region2e-122439
NC_010086:1816378:1849654184965418511681515Burkholderia multivorans ATCC 17616 chromosome 2, completeIntegrase catalytic region2e-122439
NC_007951:1928906:1951349195134919528631515Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase integrase, IstA2e-122439
NC_007951:2087385:2106075210607521075891515Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase2e-122439
NC_007952:3238241:3239089323908932406031515Burkholderia xenovorans LB400 chromosome 2, complete sequenceIntegrase, catalytic region2e-122439
NC_007951:769500:7943587943587958721515Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein2e-122439
NC_007951:2206263:2220092222009222216061515Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase, R6 like2e-122439
NC_015590:145353:1473581473581488661509Sinorhizobium meliloti AK83 chromosome 1, complete sequenceintegrase catalytic subunit4e-122438
NC_010805:575709:6241366241366256201485Burkholderia multivorans ATCC 17616 chromosome 2, completeISBmu7b transposase1e-119430
NC_010801:481601:4999224999225014061485Burkholderia multivorans ATCC 17616 chromosome 3, completeISBmu7a transposase1e-119430
NC_008750:1253354:1265548126554812670531506Shewanella sp. W3-18-1, complete genomeIntegrase, catalytic region3e-116419
NC_004431:3409389:3445858344585834473571500Escherichia coli CFT073, complete genomehypothetical protein3e-112405
NC_004431:1401681:1403622140362214051211500Escherichia coli CFT073, complete genomehypothetical protein3e-112405
NC_007941:11319:2851228512300111500Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein4e-112405
NC_009931:117904:1359021359021376381737Acaryochloris marina MBIC11017 plasmid pREB6, complete sequencetransposase, putative3e-107389
NC_011884:1998559:2011735201173520132851551Cyanothece sp. PCC 7425, complete genome7e-105381
NC_011884:4366831:4385541438554143870911551Cyanothece sp. PCC 7425, complete genome7e-105381
NC_011884:2921618:2939048293904829405981551Cyanothece sp. PCC 7425, complete genome7e-105381
NC_011884:2194767:2208132220813222096821551Cyanothece sp. PCC 7425, complete genome7e-105381
NC_009052:4168776:4168776416877641702781503Shewanella baltica OS155, complete genomeIntegrase, catalytic region2e-102373
NC_009052:3381943:3381943338194333834451503Shewanella baltica OS155, complete genomeIntegrase, catalytic region7e-102371
NC_009052:1899954:1916952191695219184541503Shewanella baltica OS155, complete genomeIntegrase, catalytic region6e-102371
NC_009052:4437649:4448857444885744503591503Shewanella baltica OS155, complete genomeIntegrase, catalytic region6e-102371
NC_009052:1211989:1226697122669712281991503Shewanella baltica OS155, complete genomeIntegrase, catalytic region6e-102371
NC_009052:3381943:3384965338496533864671503Shewanella baltica OS155, complete genomeIntegrase, catalytic region6e-102371
NC_009052:2107692:2119764211976421212661503Shewanella baltica OS155, complete genomeIntegrase, catalytic region6e-102371
NC_009052:4335754:4339397433939743408991503Shewanella baltica OS155, complete genomeIntegrase, catalytic region6e-102371
NC_008740:1484531:1504870150487015063361467Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region4e-96352
NC_014973:3290545:3305576330557633070631488Geobacter sp. M18 chromosome, complete genomeintegrase catalytic subunit2e-93343
NC_009483:66502:7784577845792931449Geobacter uraniireducens Rf4 chromosome, complete genomeintegrase catalytic subunit2e-89330
NC_002678:4859111:487688148768814877831951Mesorhizobium loti MAFF303099, complete genometransposase1e-80301
NC_004431:1166568:116711211671121167843732Escherichia coli CFT073, complete genome3e-56219
NC_008253:3122148:314004131400413140535495Escherichia coli 536, complete genomehypothetical protein1e-35151
NC_002678:4859111:487782248778224878388567Mesorhizobium loti MAFF303099, complete genometransposase7e-34145
NC_004431:1166568:116656811665681167122555Escherichia coli CFT073, complete genome2e-1997.4
NC_017249:9198000:920239192023919202693303Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein5e-1892.8
NC_013929:5850599:5857445585744558590911647Streptomyces scabiei 87.22 chromosome, complete genometransposase1e-1585.1
NC_008253:3122148:313966431396643139888225Escherichia coli 536, complete genomehypothetical protein1e-1481.6
NC_010814:903199:9135069135069150201515Geobacter lovleyi SZ, complete genomeIntegrase catalytic region1e-1275.1
NC_010814:1336943:1340725134072513422391515Geobacter lovleyi SZ, complete genomeIntegrase catalytic region1e-1275.1
NC_010814:1441327:1480469148046914819831515Geobacter lovleyi SZ, complete genomeIntegrase catalytic region1e-1275.1
NC_010814:3048441:3060566306056630620801515Geobacter lovleyi SZ, complete genomeIntegrase catalytic region1e-1275.1
NC_010814:2394250:2406666240666624081801515Geobacter lovleyi SZ, complete genomeIntegrase catalytic region1e-1275.1
NC_010814:4099:1698616986185001515Geobacter lovleyi SZ, complete genomeIntegrase catalytic region1e-1275.1
NC_011662:1160887:1167996116799611694861491Thauera sp. MZ1T, complete genomeIntegrase catalytic region5e-1272.8
NC_012918:4648220:4650002465000246515131512Geobacter sp. M21 chromosome, complete genomeintegrase2e-1067.8
NC_009483:3331500:3335403333540333369231521Geobacter uraniireducens Rf4 chromosome, complete genomeintegrase catalytic subunit5e-1066.2
NC_006177:2883476:2890021289002128914781458Symbiobacterium thermophilum IAM 14863, complete genometransposase5e-1066.2
NC_006177:2398482:2461253246125324627581506Symbiobacterium thermophilum IAM 14863, complete genometransposase5e-1066.2
NC_013446:2164974:2191577219157721931031527Comamonas testosteroni CNB-2, complete genomeIstA5e-1066.2
NC_013446:2237854:2242782224278222443081527Comamonas testosteroni CNB-2, complete genomeIstA7e-1065.9
NC_010125:2483122:2511209251120925127981590Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transposase9e-1065.5
NC_011365:738321:7383217383217397871467Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeintegrase catalytic subunit1e-0965.5
NC_015520:2612767:2627649262764926291451497Mahella australiensis 50-1 BON chromosome, complete genomeSigma-70 region 4 type 21e-0965.1
NC_011365:738321:7645157645157660381524Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeintegrase catalytic subunit1e-0965.1
NC_011365:1969198:1987862198786219893851524Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeintegrase catalytic subunit1e-0965.1
NC_014910:1765065:1778490177849017800011512Alicycliphilus denitrificans BC chromosome, complete genomeintegrase catalytic region protein1e-0964.7
NC_016616:2112211:2125198212519821266881491Dechlorosoma suillum PS chromosome, complete genometransposase2e-0964.3
NC_016616:2219486:2227868222786822293581491Dechlorosoma suillum PS chromosome, complete genometransposase2e-0964.3
NC_016616:2699350:2707457270745727089471491Dechlorosoma suillum PS chromosome, complete genometransposase2e-0964.3
NC_008541:472643:4841864841864859401755Arthrobacter sp. FB24 chromosome 1, complete sequenceTransposase and inactivated derivatives-like protein3e-0963.9
NC_010338:4530403:4538079453807945395871509Caulobacter sp. K31, complete genomeIntegrase catalytic region4e-0963.5
NC_010338:2443765:2448991244899124504991509Caulobacter sp. K31, complete genomeIntegrase catalytic region4e-0963.5
NC_014410:2329838:2331383233138323328551473Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transposase4e-0963.2
NC_015224:610807:6130276130276145351509Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative transposase6e-0962.8
NC_015224:4426167:4432258443225844337661509Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative transposase6e-0962.8
NC_009656:115390:1383671383671398751509Pseudomonas aeruginosa PA7 chromosome, complete genometransposase7e-0962.8
NC_014158:233733:2355142355142372111698Tsukamurella paurometabola DSM 20162 chromosome, complete genometransposase1e-0862
NC_015850:1614965:1614965161496516160321068Acidithiobacillus caldus SM-1 chromosome, complete genomeputative transposase2e-0861.2
NC_009434:695582:7370807370807385521473Pseudomonas stutzeri A1501, complete genometransposase2e-0860.8
NC_009434:608765:6742836742836757551473Pseudomonas stutzeri A1501, complete genometransposase2e-0860.8
NC_012856:1080000:1093338109333810948641527Ralstonia pickettii 12D chromosome 1, complete genomeIntegrase catalytic region3e-0860.5
NC_016860:4055117:4078672407867240801951524Salmonella enterica subsp. enterica serovar Typhimurium strtransposase for insertion sequences is13266e-0859.7
NC_009140:121107:1367351367351382581524Salmonella enterica enterica sv Newport str. SL254, completetransposase IstA for insertion sequence IS13266e-0859.7
NC_007973:499606:5111855111855127111527Ralstonia metallidurans CH34 chromosome 1, complete sequenceIntegrase, catalytic region6e-0859.3
NC_009511:2726296:2735985273598527374901506Sphingomonas wittichii RW1 chromosome, complete genomeintegrase catalytic subunit1e-0758.9
NC_017167:1648913:1737316173731617387821467Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1transposase9e-0858.9
NC_015222:983647:9839549839549859481995Nitrosomonas sp. AL212 chromosome, complete genomeIstB domain-containing protein ATP-binding protein8e-0858.9
NC_015740:3486226:3501252350125235027601509Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetransposase1e-0758.5
NC_015740:141910:1505841505841520921509Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetransposase2e-0757.8
NC_017162:1228723:1241080124108012421051026Acinetobacter baumannii 1656-2 chromosome, complete genomeTransposase for insertion sequences IS1326/IS13532e-0757.4
NC_010814:3048441:3072958307295830744691512Geobacter lovleyi SZ, complete genomeIntegrase catalytic region3e-0757.4
NC_015222:1607757:1609077160907716113802304Nitrosomonas sp. AL212 chromosome, complete genomeIstB domain-containing protein ATP-binding protein3e-0757
NC_015740:3678342:3711523371152337130311509Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetransposase9e-0755.5
NC_014220:1670000:1673772167377216752351464Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeIntegrase catalytic region2e-0654.7
NC_013235:2257899:2291364229136422929681605Nakamurella multipartita DSM 44233, complete genomeIstA23e-0653.5
NC_011989:2795811:2816283281628328178001518Agrobacterium vitis S4 chromosome 1, complete sequenceIS21 family transposase3e-0653.5
NC_011757:39881:4374143741452461506Methylobacterium chloromethanicum CM4, complete genomeIntegrase catalytic region5e-0653.1
NC_020210:901240:9230819230819245861506Geobacillus sp. GHH01, complete genometransposase8e-0652.4