Pre_GI: BLASTP Hits

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Query: NC_007951:2904644:2936663 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2936663, End: 2937937, Length: 1275

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014931:2929695:2938226293822629394371212Variovorax paradoxus EPS chromosome, complete genomehypothetical protein6e-22105
NC_014973:3414459:3425089342508934265221434Geobacter sp. M18 chromosome, complete genomehypothetical protein1e-1171.6
NC_009256:2725836:2740594274059427417871194Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein5e-1169.3
NC_014931:724102:7500997500997514211323Variovorax paradoxus EPS chromosome, complete genomehypothetical protein2e-1067.4
NC_015945:1908895:1910780191078019119341155Muricauda ruestringensis DSM 13258 chromosome, complete genomehypothetical protein6e-1065.5
NC_018866:1790564:1795951179595117976001650Dehalobacter sp. DCA chromosome, complete genomehypothetical protein9e-1065.1
NC_010814:1441327:1465186146518614665171332Geobacter lovleyi SZ, complete genomehypothetical protein2e-0964.3
NC_015684:362236:3703373703373715151179Oligotropha carboxidovorans OM5 chromosome, complete genomehypothetical protein3e-0963.5
NC_014828:1932971:1934720193472019364021683Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein2e-0860.8
NC_011146:3720658:3733981373398137354501470Geobacter bemidjiensis Bem, complete genomehypothetical protein2e-0860.8
NC_013959:1059004:1090954109095410922551302Sideroxydans lithotrophicus ES-1 chromosome, complete genomehypothetical protein4e-0859.7
NC_021175:687839:6968816968816981641284Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein5e-0859.3
NC_015410:3209954:3217953321795332194431491Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein8e-0858.9
NC_004463:1717890:1732093173209317335501458Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein3e-0757
NC_012854:1:3803380350801278Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,hypothetical protein4e-0756.6
NC_009792:3245368:324859132485913249358768Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0653.9
NC_004547:1873390:1878819187881918801141296Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical plasmid protein4e-0653.1
NC_012854:1:6529652978961368Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,hypothetical protein5e-0652.8
NC_015675:2247960:2251420225142022527721353Mesorhizobium opportunistum WSM2075 chromosome, complete genomehypothetical protein7e-0652.4