Pre_GI: BLASTP Hits

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Query: NC_007925:138927:166679 Rhodopseudomonas palustris BisB18, complete genome

Start: 166679, End: 166894, Length: 216

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008435:1131242:116366511636651163880216Rhodopseudomonas palustris BisA53, complete genomephage transcriptional regulator, AlpA1e-28124
NC_007925:1085500:108685210868521087058207Rhodopseudomonas palustris BisB18, complete genomephage transcriptional regulator, AlpA2e-26117
NC_015675:4565500:457963945796394579836198Mesorhizobium opportunistum WSM2075 chromosome, complete genomephage transcriptional regulator AlpA7e-25112
NC_009720:251703:276787276787277002216Xanthobacter autotrophicus Py2, complete genomephage transcriptional regulator, AlpA1e-23108
NC_015675:5607297:563200956320095632224216Mesorhizobium opportunistum WSM2075 chromosome, complete genomephage transcriptional regulator AlpA1e-23108
NC_009720:464078:485378485378485578201Xanthobacter autotrophicus Py2, complete genomephage transcriptional regulator, AlpA3e-23106
NC_014217:2760898:276247027624702762673204Starkeya novella DSM 506 chromosome, complete genomephage transcriptional regulator, AlpA6e-23105
NC_010338:359940:379731379731379931201Caulobacter sp. K31, complete genomephage transcriptional regulator, AlpA5e-2096.3
NC_004578:3849835:386503638650363865278243Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein, putative4e-1270.1
NC_015593:2841856:285143028514302851639210Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeProphage CP4-57 regulatory2e-1064.7
NC_020829:5174354:518228151822815182514234Pseudomonas denitrificans ATCC 13867, complete genomeDNA-binding protein2e-1064.3
NC_018691:3525430:356425235642523564566315Alcanivorax dieselolei B5 chromosome, complete genomePhage transcriptional regulator, AlpA1e-0962
NC_005139:796546:813042813042813236195Vibrio vulnificus YJ016 chromosome I, complete sequencepredicted transcriptional regulator9e-0958.9
NC_009256:458649:463834463834464040207Burkholderia vietnamiensis G4 chromosome 1, complete sequencephage transcriptional regulator AlpA2e-0858.2
NC_015379:908904:935089935089935310222Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transcription factor, AlpA family2e-0857.8
NC_003295:998000:101150510115051011771267Ralstonia solanacearum GMI1000, complete genomePUTATIVE BACTERIOPHAGE DNA-BINDING TRANSCRIPTION REGULATOR PROTEIN3e-0857
NC_006511:4465495:446677144667714467101331Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5e-0856.6
NC_012560:1677798:168635916863591686646288Azotobacter vinelandii DJ, complete genomeProphage CP4-57 regulatory, AlpA-like protein5e-0856.6
NC_021150:1677811:168637216863721686659288Azotobacter vinelandii CA6, complete genomeProphage CP4-57 regulatory, AlpA-like protein5e-0856.6
NC_010676:2793237:279827727982772798510234Burkholderia phytofirmans PsJN chromosome 2, complete sequencephage transcriptional regulator, AlpA7e-0856.2
NC_021066:5342127:535911053591105359376267Raoultella ornithinolytica B6, complete genomephage DNA binding protein6e-0856.2
NC_002505:1931750:193580119358011936007207Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator6e-0856.2
NC_009457:1444449:148890414889041489110207Vibrio cholerae O395 chromosome 2, complete sequencetranscriptional regulator6e-0856.2
NC_012578:1838470:188293418829341883140207Vibrio cholerae M66-2 chromosome I, complete sequencetranscriptional regulator6e-0856.2
NC_012582:2013515:202032320203232020529207Vibrio cholerae O395 chromosome chromosome I, complete sequencetranscriptional regulator6e-0856.2
NC_012668:1688500:171150017115001711706207Vibrio cholerae MJ-1236 chromosome 1, complete sequencetranscriptional regulator6e-0856.2
NC_016944:1978058:198210919821091982315207Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional regulator6e-0856.2
NC_012668:1688500:169464616946461694876231Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein6e-0856.2
NC_011147:4460726:446200144620014462267267Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-0856.2
NC_011094:2791719:281336128133612813570210Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein5e-0856.2
NC_017270:1755552:178876517887651788965201Vibrio cholerae LMA3984-4 chromosome chromosome I, completetranscriptional regulator, AlpA like protein8e-0855.8
NC_009901:1516340:153082715308271531030204Shewanella pealeana ATCC 700345, complete genomephage transcriptional regulator, AlpA1e-0755.5
NC_015379:2417312:246348524634852463706222Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, AlpA family1e-0755.5
NC_005139:2201820:227257322725732272794222Vibrio vulnificus YJ016 chromosome I, complete sequencepredicted transcriptional regulator9e-0855.5
NC_017033:2081206:210752221075222107743222Frateuria aurantia DSM 6220 chromosome, complete genomeputative transcriptional regulator1e-0755.1
NC_013421:1819036:184166718416671841861195Pectobacterium wasabiae WPP163, complete genomephage transcriptional regulator, AlpA2e-0754.7
NC_011080:4703266:471759947175994717859261Salmonella enterica subsp. enterica serovar Newport str. SL254,phage transcriptional regulator, AlpA2e-0754.7
NC_016445:1363831:140720214072021407378177Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetranscriptional regulator2e-0754.7
NC_017270:1755552:177452717745271774703177Vibrio cholerae LMA3984-4 chromosome chromosome I, completetranscriptional regulator2e-0754.7
NC_010622:249625:279209279209279430222Burkholderia phymatum STM815 chromosome 1, complete sequencephage transcriptional regulator, AlpA2e-0754.7
NC_008322:2077628:209572820957282095949222Shewanella sp. MR-7, complete genomephage transcriptional regulator, AlpA2e-0754.7
NC_015554:4648919:466519546651954665377183Alteromonas sp. SN2 chromosome, complete genomephage transcriptional regulator, AlpA2e-0754.3
NC_010067:191190:199577199577199783207Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0754.3
NC_009439:1297851:130657513065751306763189Pseudomonas mendocina ymp, complete genomephage transcriptional regulator, AlpA3e-0753.9
NC_010102:2862178:286427828642782864544267Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-0753.9
NC_015424:3520783:355680435568043556980177Aeromonas veronii B565 chromosome, complete genomeputative transcriptional regulator3e-0753.9
NC_013456:2984491:299468929946892994889201Vibrio sp. Ex25 chromosome 1, complete genomephage transcriptional regulator AlpA3e-0753.9
NC_017986:1862408:187337618733761873591216Pseudomonas putida ND6 chromosome, complete genomephage transcriptional regulator AlpA4e-0753.5
NC_014117:132524:174940174940175527588Burkholderia sp. CCGE1002 chromosome chromosome 1, completephage transcriptional regulator, AlpA4e-0753.5
NC_014121:677799:691347691347691613267Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage transcriptional regulator, AlpA4e-0753.5
NC_010322:5293652:531510753151075315289183Pseudomonas putida GB-1 chromosome, complete genomephage transcriptional regulator AlpA4e-0753.5
NC_011080:2870428:288471228847122884978267Salmonella enterica subsp. enterica serovar Newport str. SL254,phage DNA binding protein3e-0753.5
NC_015731:1578106:159965415996541599836183Nitrosomonas sp. Is79A3 chromosome, complete genomephage transcriptional regulator AlpA6e-0753.1
NC_008321:1993541:201135520113552011549195Shewanella sp. MR-4, complete genomephage transcriptional regulator, AlpA5e-0753.1
NC_002695:301939:318189318189318449261Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA binding protein5e-0753.1
NC_002655:301940:318190318190318450261Escherichia coli O157:H7 EDL933, complete genomeputative regulatory protein encoded in prophage CP-933I5e-0753.1
NC_011353:305820:322069322069322329261Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage DNA binding protein5e-0753.1
NC_013008:306953:323381323381323641261Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulatory protein encoded in prophage CP-933I5e-0753.1
NC_013941:338121:359163359163359423261Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage DNA binding protein5e-0753.1
NC_013592:2968500:299374929937492993943195Dickeya dadantii Ech586, complete genomephage transcriptional regulator, AlpA5e-0753.1
NC_016845:575123:589780589780590046267Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,phage DNA binding protein5e-0753.1
NC_004547:1873390:188101818810181881212195Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative prophage regulatory protein7e-0752.8
NC_016818:1795576:183513518351351835329195Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator7e-0752.8
CU928160:4570498:458052645805264580732207Escherichia coli IAI1 chromosome, complete genomeputative phage DNA binding protein7e-0752.8
NC_011741:4570498:458052645805264580732207Escherichia coli IAI1 chromosome, complete genomeputative phage DNA binding protein7e-0752.8
NC_009436:3117661:314615831461583146364207Enterobacter sp. 638, complete genomephage transcriptional regulator, AlpA6e-0752.8
NC_007722:2993852:299950229995022999717216Erythrobacter litoralis HTCC2594, complete genomehypothetical protein6e-0752.8
NC_015224:3291736:331240633124063312600195Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,phage transcriptional regulator, AlpA6e-0752.8
NC_005085:659378:678312678312678530219Chromobacterium violaceum ATCC 12472, complete genomeprobable prophage regulatory protein6e-0752.8
NC_013508:3593000:360746636074663607687222Edwardsiella tarda EIB202, complete genomehypothetical protein1e-0652.4
NC_010170:1324758:135213513521351352347213Bordetella petrii, complete genomeputative transcriptional regulator (phage-related)8e-0752.4
NC_014306:4901390:494030849403084940574267Erwinia billingiae Eb661, complete genomePhage transcriptional regulator, AlpA-family8e-0752.4
NC_016857:2871689:289653928965392896805267Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage DNA binding protein1e-0652
NC_012917:833721:838409838409838669261Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage transcriptional regulator, AlpA1e-0652
NC_010634:1916000:191718019171801917365186Yersinia pseudotuberculosis PB1/+, complete genomephage transcriptional regulator, AlpA1e-0652
NC_009381:1362471:139729913972991397484186Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulator1e-0652
NC_012731:3411161:342822134282213428406186Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative transcriptional regulator1e-0652
NC_009092:1441813:145459814545981454783186Shewanella loihica PV-4, complete genomephage transcriptional regulator, AlpA1e-0652
NC_013716:2139952:216269121626912162930240Citrobacter rodentium ICC168, complete genomehypothetical protein1e-0652
NC_012912:1701231:171525317152531715447195Dickeya zeae Ech1591, complete genomephage transcriptional regulator, AlpA1e-0652
NC_008253:1938975:196845019684501968668219Escherichia coli 536, complete genomeputative regulatory protein1e-0652
NC_014500:3097362:314293231429323143126195Dickeya dadantii 3937 chromosome, complete genomeDNA-binding protein1e-0652
NC_012791:4736084:476838647683864768652267Variovorax paradoxus S110 chromosome 1, complete genomephage transcriptional regulator, AlpA1e-0652
NC_003143:2137945:213871521387152138996282Yersinia pestis CO92, complete genomeputative transcriptional regulator2e-0651.6
NC_008150:1420825:142179414217941422075282Yersinia pestis Antiqua, complete genomehypothetical protein2e-0651.6
NC_005810:1794490:179545917954591795740282Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulator2e-0651.6
NC_017047:2079368:208454920845492084743195Rahnella aquatilis HX2 chromosome, complete genomeputative prophage regulatory protein1e-0651.6
NC_016631:2051475:205836320583632058578216Granulicella mallensis MP5ACTX8 chromosome, complete genomephage transcriptional regulator, AlpA1e-0651.6
NC_002505:514732:530402530402530602201Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator2e-0651.2
NC_012668:83641:897378973789937201Vibrio cholerae MJ-1236 chromosome 1, complete sequencetranscriptional regulator2e-0651.2
NC_016944:514742:530410530410530610201Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional regulator2e-0651.2
NC_014306:4376012:441108144110814411347267Erwinia billingiae Eb661, complete genomePhage transcriptional regulator, AlpA-family2e-0651.2
NC_014541:475350:516467516467516799333Ferrimonas balearica DSM 9799 chromosome, complete genomephage transcriptional regulator, AlpA2e-0651.2
NC_010468:49074:496614966149927267Escherichia coli ATCC 8739, complete genomephage transcriptional regulator, AlpA2e-0651.2
NC_010498:4072681:408781140878114088077267Escherichia coli SMS-3-5, complete genomeAlpA family transcriptional regulator2e-0651.2
NC_010468:1130000:115080511508051151071267Escherichia coli ATCC 8739, complete genomephage transcriptional regulator, AlpA2e-0651.2
NC_003198:4676536:469084946908494691172324Salmonella enterica subsp. enterica serovar Typhi str. CT18,phage DNA binding protein2e-0651.2
NC_004631:4661000:467373846737384674061324Salmonella enterica subsp. enterica serovar Typhi Ty2, completephage DNA binding protein2e-0651.2
NC_013361:4959323:495991949599194960185267Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA binding transcriptional regulator2e-0651.2
NC_011740:448000:452630452630452896267Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein of bacteriophage origin, putative COG3311, putative DNA binding2e-0651.2
NC_007613:4217557:422168542216854221951267Shigella boydii Sb227, complete genomehypothetical protein2e-0651.2
NC_012791:2386000:240058224005822400848267Variovorax paradoxus S110 chromosome 1, complete genomephage transcriptional regulator, AlpA2e-0650.8
NC_020211:996497:100966210096621009928267Serratia marcescens WW4, complete genomehypothetical protein3e-0650.4
NC_012917:3684840:368998636899863690246261Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage transcriptional regulator, AlpA3e-0650.4
NC_010334:4925936:493241549324154932630216Shewanella halifaxensis HAW-EB4, complete genomephage transcriptional regulator, AlpA5e-0650.1
NC_009436:3367194:338079433807943381060267Enterobacter sp. 638, complete genomephage transcriptional regulator, AlpA4e-0650.1
NC_014931:2929695:294409229440922944325234Variovorax paradoxus EPS chromosome, complete genomephage transcriptional regulator, AlpA6e-0649.7
NC_011283:1811000:185314418531441853353210Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AlpA family7e-0649.3
NC_008344:49039:121606121606121818213Nitrosomonas eutropha C91, complete genomephage transcriptional regulator, AlpA7e-0649.3
NC_013421:1819036:184891018489101849116207Pectobacterium wasabiae WPP163, complete genomephage transcriptional regulator, AlpA7e-0649.3
NC_012880:4117376:412043941204394120642204Dickeya dadantii Ech703, complete genomephage transcriptional regulator, AlpA7e-0649.3
NC_010170:4800000:480598048059804806240261Bordetella petrii, complete genomePredicted transcriptional regulator8e-0649.3
NC_011283:4438500:445473644547364454942207Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AlpA family8e-0648.9
NC_013892:1272448:129876412987641298970207Xenorhabdus bovienii SS-2004 chromosome, complete genomeCP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage1e-0548.9