Pre_GI: BLASTP Hits

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Query: NC_007613:761234:771438 Shigella boydii Sb227, complete genome

Start: 771438, End: 772301, Length: 864

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014815:3272791:328042432804243281275852Micromonospora sp. L5 chromosome, complete genomehnh endonuclease3e-1582.8
NC_015422:3413386:343622534362253437070846Alicycliphilus denitrificans K601 chromosome, complete genomeputative EA31 protein3e-1169.3
NC_013508:876431:887638887638888546909Edwardsiella tarda EIB202, complete genomehypothetical protein2e-0963.2
NC_009434:695582:735806735806736624819Pseudomonas stutzeri A1501, complete genomeEA31 protein2e-0963.2
NC_013929:3702994:3716979371697937180101032Streptomyces scabiei 87.22 chromosome, complete genomelambdoid prophage protein3e-0962.4
NC_021175:2063611:206918320691832070124942Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein7e-0961.6
NC_015947:2231493:224384322438432244730888Burkholderia sp. JV3 chromosome, complete genomehypothetical protein6e-0755.1
NC_007925:1085500:110254111025411103068528Rhodopseudomonas palustris BisB18, complete genomehypothetical protein9e-0754.3
NC_021177:3627947:364538636453863646234849Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein2e-0653.5
NC_011992:2279752:230710323071032307516414Acidovorax ebreus TPSY, complete genome2e-0653.5
NC_010002:1879220:192909719290971929798702Delftia acidovorans SPH-1, complete genomehypothetical protein4e-0652.4
NC_007005:2686551:272269027226902723565876Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein4e-0652