Pre_GI: BLASTP Hits

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Query: NC_007613:4403070:4405394 Shigella boydii Sb227, complete genome

Start: 4405394, End: 4405618, Length: 225

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:3453683:346996934699693470193225Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-36151
NC_004431:3409389:344831834483183448542225Escherichia coli CFT073, complete genomehypothetical protein1e-36151
NC_013364:1306756:130993413099341310158225Escherichia coli O111:H- str. 11128, complete genomehypothetical protein1e-35148
NC_013361:1335166:133834313383431338567225Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-35148
NC_002695:1417912:141791214179121418136225Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-35145
CP002797:4603787:462681146268114627008198Escherichia coli NA114, complete genomeHypothetical protein8e-31132