Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1378452 Shigella boydii Sb227, complete genome

Start: 1378452, End: 1378919, Length: 468

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014306:103545:126463126463126948486Erwinia billingiae Eb661, complete genomeTail completion protein r3e-1787.4
NC_014837:3766426:376599937659993766430432Pantoea sp. At-9b chromosome, complete genomeP2 phage tail completion R family protein6e-1269.7
NC_015856:1152021:117355611735561174044489Collimonas fungivorans Ter331 chromosome, complete genomeputative phage tail protein1e-1168.9
NC_003919:3113343:311334331133433113762420Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related tail protein1e-1168.9
NC_020209:3262000:328222632822263282708483Pseudomonas poae RE*1-1-14, complete genomeP2 phage tail completion protein R (GpR)3e-1167.4
NC_003902:3514000:353711635371163537535420Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related tail protein7e-1166.2
NC_012724:1892000:191112819111281911604477Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein3e-1064.3
NC_016845:1773416:179262717926271793058432Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,P2 phage tail completion protein R4e-1063.5
NC_020260:312805:335974335974336405432Cronobacter sakazakii Sp291, complete genomehypothetical protein9e-1062.8
NC_017047:4037674:406044740604474060914468Rahnella aquatilis HX2 chromosome, complete genometail protein1e-0962
NC_015061:1598920:162348316234831623950468Rahnella sp. Y9602 chromosome, complete genometail protein1e-0962
NC_015224:2095816:209771520977152098182468Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,P2 phage tail completion R family protein3e-0960.8
NC_014562:1698253:171454917145491715016468Pantoea vagans C9-1 chromosome, complete genomeTail completion protein R (GpR)3e-0960.8
NC_017047:1551836:157418615741861574653468Rahnella aquatilis HX2 chromosome, complete genometail protein4e-0960.5
NC_016818:1605918:162743716274371627904468Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeP2 phage tail completion protein R (GpR)6e-0960.1
NC_014228:3022903:304040030404003040816417Xenorhabdus nematophila ATCC 19061, complete genomeTail completion protein R (GpR)2e-0858.5
NC_003198:4453457:448768644876864488117432Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail protein2e-0858.5
NC_012962:4942000:494935849493584949774417Photorhabdus asymbiotica, complete genomeputative phage tail protein5e-0857
NC_020064:871338:891432891432891896465Serratia marcescens FGI94, complete genomeP2 phage tail completion protein R (GpR)4e-0753.9
NC_007712:1997010:201986520198652020242378Sodalis glossinidius str. 'morsitans', complete genomeputative phage tail protein2e-0651.6
NC_009648:3803622:381848138184813818957477Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage, tail completion protein7e-0649.7