Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1377824 Shigella boydii Sb227, complete genome

Start: 1377824, End: 1378459, Length: 636

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014306:103545:126948126948127592645Erwinia billingiae Eb661, complete genomeconserved uncharacterized protein2e-37155
NC_012962:4942000:494869149486914949356666Photorhabdus asymbiotica, complete genomepredicted tail completion phage protein2e-36151
NC_014228:3022903:303976230397623040397636Xenorhabdus nematophila ATCC 19061, complete genomeputative phage tail protein S4e-36151
NC_020209:3262000:328269832826983283156459Pseudomonas poae RE*1-1-14, complete genomephage virion morphogenesis protein1e-1686.7
NC_014837:2458780:248067624806762481125450Pantoea sp. At-9b chromosome, complete genomephage virion morphogenesis protein8e-1270.5
NC_014311:1507945:151585915158591516254396Ralstonia solanacearum PSI07 chromosome, complete genomebacteriophage protein, phage P2 Tail completion protein gpS8e-1167
NC_009648:3803622:381803938180393818488450Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage, tail completion protein3e-1065.5
NC_020260:312805:336398336398336844447Cronobacter sakazakii Sp291, complete genomebacteriophage tail completion protein4e-1064.7
NC_012724:1892000:191160119116011912074474Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein6e-1064.3
NC_015856:1152021:117401711740171174511495Collimonas fungivorans Ter331 chromosome, complete genomephage virion morphogenesis (putative tail completion) protein9e-1063.5
NC_007434:3973145:397537539753753975740366Burkholderia pseudomallei 1710b chromosome I, complete sequencephage tail completion protein1e-0963.5
NC_009076:3564500:356781735678173568182366Burkholderia pseudomallei 1106a chromosome I, complete sequencephage tail completion protein1e-0963.5
NC_003919:3113343:311375031137503114196447Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related tail protein1e-0963.2
NC_015061:1598920:162394316239431624389447Rahnella sp. Y9602 chromosome, complete genomephage virion morphogenesis protein6e-0960.8
NC_016818:1605918:162789716278971628355459Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage virion morphogenesis protein, putative tail completion6e-0960.8
NC_003902:3514000:353752335375233537981459Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related tail protein9e-0960.5
NC_007508:4476726:448684444868444487299456Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomephage-related tail protein1e-0860.1
NC_016845:1773416:179309317930931793497405Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,phage virion morphogenesis protein2e-0859.7
NC_015224:2095816:209727220972722097718447Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Phage virion morphogenesis protein1e-0859.7
NC_017047:4037674:406090740609074061365459Rahnella aquatilis HX2 chromosome, complete genomephage virion morphogenesis protein2e-0859.3
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-0859.3
NC_003198:4453457:448724744872474487693447Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail completion protein3e-0858.2
NC_017047:1551836:157464615746461575095450Rahnella aquatilis HX2 chromosome, complete genomephage virion morphogenesis protein2e-0756.2
NC_014562:1698253:171501317150131715459447Pantoea vagans C9-1 chromosome, complete genomeTail completion protein S (GpS)2e-0652.4