Pre_GI: BLASTP Hits

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Query: NC_007604:1442500:1450087 Synechococcus elongatus PCC 7942, complete genome

Start: 1450087, End: 1451241, Length: 1155

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006576:161112:1694771694771707121236Synechococcus elongatus PCC 6301, complete genomehypothetical protein0687
NC_010505:400950:4082794082794095291251Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein3e-2099.8
NC_007604:2213659:2236384223638422376431260Synechococcus elongatus PCC 7942, complete genomehypothetical protein8e-1995.1
NC_006576:2073163:2079387207938720806461260Synechococcus elongatus PCC 6301, complete genomehypothetical protein9e-1995.1
NC_012988:1540587:1565855156585515670211167Methylobacterium extorquens DM4, complete genomemultidrug resistance efflux pump1e-1584.3
NC_012808:921985:9328259328259339911167Methylobacterium extorquens AM1, complete genomeMultidrug resistance efflux pump1e-1584.3
NC_010172:1222150:1240255124025512414901236Methylobacterium extorquens PA1, complete genomehypothetical protein2e-1584
NC_011757:1246000:1267355126735512685901236Methylobacterium chloromethanicum CM4, complete genomehypothetical protein2e-1583.6
NC_014121:4043198:4068499406849940697251227Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-1274.7
NC_011365:1969198:200271220027122003623912Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomesecretion protein HlyD family protein4e-0859.3
NC_013353:2911741:2933173293317329343361164Escherichia coli O103:H2 str. 12009, complete genomeEmrKY-TolC multidrug resistance efflux pump protein K, membrane fusion protein component6e-0858.9
AP010958:2911741:2933173293317329343361164Escherichia coli O103:H2 str. 12009 DNA, complete genomeEmrKY-TolC multidrug resistance efflux pump protein K, membrane fusion protein component6e-0858.9
NC_004741:2456297:2463378246337824645411164Shigella flexneri 2a str. 2457T, complete genomemultidrug resistance protein K1e-0758.2
NC_004337:2478461:2485239248523924864021164Shigella flexneri 2a str. 301, complete genomemultidrug resistance protein K1e-0758.2
NC_008258:2473000:2478978247897824801411164Shigella flexneri 5 str. 8401, complete genomemultidrug resistance protein K1e-0758.2
NC_017328:2516000:2522881252288125240441164Shigella flexneri 2002017 chromosome, complete genomeMultidrug resistance protein K1e-0758.2
CP002516:1419413:1438059143805914392221164Escherichia coli KO11, complete genomeefflux pump membrane protein1e-0758.2
CP002185:2659628:2666635266663526677981164Escherichia coli W, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0758.2
NC_011415:2732000:2750284275028427514471164Escherichia coli SE11 chromosome, complete genomemultidrug resistance protein1e-0758.2
NC_016902:1419413:1438059143805914392221164Escherichia coli KO11FL chromosome, complete genomeefflux pump membrane protein1e-0758.2
NC_000913:2455037:2480198248019824813611164Escherichia coli K12, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
NC_010473:2548946:2571963257196325731261164Escherichia coli str. K-12 substr. DH10B, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
NC_010468:1412791:1427744142774414289071164Escherichia coli ATCC 8739, complete genomeefflux pump membrane protein1e-0757.8
NC_009800:2505872:2513581251358125147441164Escherichia coli HS, complete genomedrug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK1e-0757.8
NC_011748:2708500:2714557271455727157201164Escherichia coli 55989, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
CU928145:2708500:2714557271455727157201164Escherichia coli 55989 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
AC_000091:2462461:2487622248762224887851164Escherichia coli W3110 DNA, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
NC_011601:2614691:2638590263859026397531164Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump protein K, membrane fusion protein component2e-0757.8
NC_004431:2747237:2764564276456427657271164Escherichia coli CFT073, complete genomeMultidrug resistance protein K2e-0757.8
NC_012759:2342986:2366003236600323671661164Escherichia coli BW2952 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
NC_012947:1363724:1378677137867713798401164Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeefflux pump membrane protein1e-0757.8
NC_010658:2529033:2536873253687325380361164Shigella boydii CDC 3083-94, complete genomedrug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK1e-0757.8
NC_007613:2376974:2384108238410823852711164Shigella boydii Sb227, complete genomemultidrug resistance protein K1e-0757.8
NC_002655:3260500:3280272328027232814351164Escherichia coli O157:H7 EDL933, complete genomemultidrug resistance protein K1e-0757.8
NC_002695:3189425:3210313321031332114761164Escherichia coli O157:H7 str. Sakai, complete genomemultidrug resistance protein K1e-0757.8
NC_013008:3231414:3269300326930032704631164Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
NC_011353:3276734:3314429331442933155921164Escherichia coli O157:H7 str. EC4115 chromosome, complete genomedrug resistance MFS transporter membrane fusion protein (MFP) subunit EmrK1e-0757.8
NC_010498:2555706:2572996257299625741591164Escherichia coli SMS-3-5, complete genomedrug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK1e-0757.8
NC_013941:2928000:2951379295137929525421164Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDrug resistance MFS transporter membrane fusion protein (MFP) subunit EmrK1e-0757.8
NC_012967:2409500:2416403241640324175661164Escherichia coli B str. REL606 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component1e-0757.8
NC_008253:2499735:2505611250561125066511041Escherichia coli 536, complete genomemultidrug resistance protein K2e-0757.4
NC_007946:2625461:2643444264344426446071164Escherichia coli UTI89, complete genomemultidrug resistance protein K2e-0757.4
NC_011745:2751437:2756919275691927580821164Escherichia coli ED1a chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component2e-0757.4
NC_011742:2533500:2539076253907625402391164Escherichia coli S88 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component2e-0757.4
NC_007606:2353098:2358987235898723601501164Shigella dysenteriae Sd197, complete genomemultidrug resistance protein K2e-0757.4
NC_021066:1712905:175562417556241756487864Raoultella ornithinolytica B6, complete genomeauxiliary transport protein, membrane fusion protein (MFP) family2e-0757
NC_007384:2587876:2595344259534425965071164Shigella sonnei Ss046, complete genomemultidrug resistance protein K2e-0757
NC_016822:2678691:2686159268615926873221164Shigella sonnei 53G, complete genomemultidrug resistance protein K2e-0757
NC_009801:2639787:2645685264568526468481164Escherichia coli E24377A, complete genomedrug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK2e-0757
NC_008563:2610499:2615981261598126170361056Escherichia coli APEC O1, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein2e-0757
NC_011751:2768864:2774763277476327759261164Escherichia coli UMN026 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component2e-0757
CU928160:2513000:2519046251904625202091164Escherichia coli IAI1 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component2e-0757
NC_011741:2513000:2519046251904625202091164Escherichia coli IAI1 chromosome, complete genomeEmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component2e-0757
NC_017075:1970168:197235719723571973289933Rubrivivax gelatinosus IL144, complete genomesecretion protein HlyD family protein6e-0755.8
NC_012779:2957000:2981308298130829824861179Edwardsiella ictaluri 93-146, complete genomemultidrug resistance protein A1e-0551.6