Pre_GI: BLASTP Hits

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Query: NC_007384:3956465:3980448 Shigella sonnei Ss046, complete genome

Start: 3980448, End: 3980879, Length: 432

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:88500:111993111993112424432Escherichia coli KO11FL chromosome, complete genomeRhodanese domain-containing protein2e-78290
NC_012947:94930:118656118656119087432Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completerhodanese2e-78290
CP002516:88500:111993111993112424432Escherichia coli KO11, complete genomeRhodanese domain protein2e-78290
NC_010468:80000:103564103564103995432Escherichia coli ATCC 8739, complete genomeRhodanese domain protein2e-78290
NC_004337:3590323:375718037571803757611432Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-77287
NC_016831:3875134:390096639009663901397432Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-74275
NC_013716:4408201:443484744348474435278432Citrobacter rodentium ICC168, complete genomeputative rhodanase-like exported protein4e-71266
NC_013892:4129500:415066041506604151097438Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein4e-51199
NC_020418:603750:607585607585608022438Morganella morganii subsp. morganii KT, complete genomeRhodanese-related sulfurtransferase1e-48191
NC_016816:127802:170536170536170967432Pantoea ananatis LMG 5342, complete genomerhodanese domain-containing protein4e-47186
NC_008577:44184:619946199462470477Shewanella sp. ANA-3 chromosome 1, complete sequenceRhodanese domain protein2e-30130
NC_007508:237771:240885240885241319435Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative rhodanese-like membrane protein5e-24109
NC_013851:3392644:341470234147023415124423Allochromatium vinosum DSM 180 chromosome, complete genomeRhodanese domain protein1e-1788.6
NC_004344:622318:624907624907625335429Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein1e-1478.6
NC_015572:293665:295970295970296407438Methylomonas methanica MC09 chromosome, complete genomeRhodanese-like protein1e-1375.1
NC_013959:1195249:120344012034401203844405Sideroxydans lithotrophicus ES-1 chromosome, complete genomeRhodanese domain protein2e-1374.3
NC_016616:1336000:133658513365851336998414Dechlorosoma suillum PS chromosome, complete genomeRhodanese-related sulfurtransferase3e-1373.9
NC_013959:1195249:120446612044661204870405Sideroxydans lithotrophicus ES-1 chromosome, complete genomeRhodanese domain protein4e-1373.6
NC_017033:3189282:320388232038823204328447Frateuria aurantia DSM 6220 chromosome, complete genomeRhodanese-related sulfurtransferase3e-1270.5
NC_010336:733751:747466747466747888423Francisella philomiragia subsp. philomiragia ATCC 25017, completerhodanese-related sulfurtransferase4e-1270.1
NC_007520:2128178:214673621467362147185450Thiomicrospira crunogena XCL-2, complete genomeRhodanese-like4e-1270.1
NC_004545:15650:566675666757110444Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomehypothetical protein2e-1168.2
NC_015696:105748:112550112550112972423Francisella sp. TX077308 chromosome, complete genomeRhodanese-like domain-containing protein3e-1167.4
NC_010524:3914880:392806939280693928491423Leptothrix cholodnii SP-6, complete genomeRhodanese domain protein1e-1065.5
NC_012881:3004784:303004430300443030454411Desulfovibrio salexigens DSM 2638, complete genomeRhodanese domain protein7e-0856.2
NC_006510:2110430:211133221113322111697366Geobacillus kaustophilus HTA426, complete genomehypothetical protein2e-0754.7
NC_007793:1633080:164803216480321648418387Staphylococcus aureus subsp. aureus USA300, complete genomehypothetical protein3e-0753.9
NC_013411:2951559:295364829536482954013366Geobacillus sp. Y412MC61, complete genomeRhodanese domain protein3e-0753.9
NC_014915:2092678:209358020935802093945366Geobacillus sp. Y412MC52 chromosome, complete genomeRhodanese domain protein3e-0753.9
NC_009328:2083386:210120121012012101566366Geobacillus thermodenitrificans NG80-2 chromosome, complete genomerhodanese-related sulfurtransferase-like protein5e-0753.1
NC_009614:769851:780519780519780917399Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein5e-0753.1
NC_012440:1841315:186556218655621865942381Persephonella marina EX-H1, complete genomehypothetical protein5e-0753.1
NC_013205:1275012:130177013017701302162393Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Rhodanese domain protein5e-0753.1
NC_008321:4631866:465342946534294653734306Shewanella sp. MR-4, complete genomeRhodanese domain protein1e-0652
NC_008577:4907497:492905249290524929357306Shewanella sp. ANA-3 chromosome 1, complete sequenceRhodanese domain protein2e-0651.2
NC_020210:2133996:213693621369362137301366Geobacillus sp. GHH01, complete genomerhodanese-like protein3e-0650.4
NC_015949:1887478:1903596190359619052841689Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase7e-0649.3
NC_017208:823540:835831835831836190360Bacillus thuringiensis serovar chinensis CT-43 chromosome, completerhodanese-related sulfurtransferase9e-0648.9