Pre_GI: BLASTP Hits

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Query: NC_007384:3383983:3386188 Shigella sonnei Ss046, complete genome

Start: 3386188, End: 3386946, Length: 759

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020211:3535622:353637835363783537172795Serratia marcescens WW4, complete genomeputative ATP-binding protein4e-88324
NC_014306:4106569:412744641274464128204759Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein5e-83307
NC_007384:3383983:338544333854433386156714Shigella sonnei Ss046, complete genomehypothetical protein1e-43176
NC_014306:4106569:412817941281794128937759Erwinia billingiae Eb661, complete genomeputative lipoprotein3e-41168
NC_020211:3535622:353562235356223536347726Serratia marcescens WW4, complete genomeputative ATP-binding protein2e-40166
NC_014306:4106569:412928941292894130023735Erwinia billingiae Eb661, complete genomeputative lipoprotein1e-25117
NC_014315:3004125:3028337302833730298871551Nitrosococcus watsoni C-113 chromosome, complete genomehypothetical protein5e-1788.2