Pre_GI: BLASTP Hits

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Query: NC_007384:2933625:2946772 Shigella sonnei Ss046, complete genome

Start: 2946772, End: 2948325, Length: 1554

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:2788164:2803842280384228060942253Escherichia coli HS, complete genomealpha amylase family protein01027
NC_010473:2839902:2876184287618428784362253Escherichia coli str. K-12 substr. DH10B, complete genome01023
NC_008258:2905413:2908014290801429102662253Shigella flexneri 5 str. 8401, complete genomeputative enzyme01018
NC_013941:3300000:3346327334632733485792253Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein01017
NC_017328:2785309:2797883279788328001352253Shigella flexneri 2002017 chromosome, complete genomealpha amylase01015
NC_004337:2747917:2759001275900127612532253Shigella flexneri 2a str. 301, complete genome01014
NC_011750:2928990:2952498295249829547502253Escherichia coli IAI39 chromosome, complete genomeputative alpha-amylase01010
NC_010498:2847359:2860012286001228622642253Escherichia coli SMS-3-5, complete genomealpha amylase family protein01008
NC_011751:3048490:3089751308975130920032253Escherichia coli UMN026 chromosome, complete genomeputative Alpha-amylase01005
NC_011741:2818750:2831233283123328330741842Escherichia coli IAI1 chromosome, complete genomeputative alpha-amylase0752
NC_009801:2898426:2946921294692129487621842Escherichia coli E24377A, complete genomealpha amylase domain protein0752
CU928160:2818750:2831233283123328330741842Escherichia coli IAI1 chromosome, complete genomeputative Alpha-amylase0752
NC_010468:1130000:1135932113593211377731842Escherichia coli ATCC 8739, complete genomealpha amylase catalytic region0746
NC_016902:1165726:1171092117109211721351044Escherichia coli KO11FL chromosome, complete genomealpha amylase0670
CP002516:1165726:1171092117109211721351044Escherichia coli KO11, complete genomealpha amylase all-beta0670
CU928145:2973968:2997012299701229986581647Escherichia coli 55989 chromosome, complete genomefragment of putative Alpha-amylase (part 1)0650
NC_011748:2973968:2997012299701229986581647Escherichia coli 55989, complete genome0650
CP002185:2919752:2933758293375829347651008Escherichia coli W, complete genome0647
NC_002655:3538656:3577118357711835781251008Escherichia coli O157:H7 EDL933, complete genomeputative enzyme2e-175615
NC_002695:3468873:3509828350982835108351008Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-175615
NC_011353:3573641:3614064361406436150711008Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-175615
NC_013353:3238742:3250167325016732511741008Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein9e-173607
AP010958:3238742:3250167325016732511741008Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein9e-173607
NC_011415:3006794:302162330216233022255633Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-107390
NC_004741:2741971:275484627548462755478633Shigella flexneri 2a str. 2457T, complete genome1e-106387
NC_011353:3573641:3612819361281936140571239Escherichia coli O157:H7 str. EC4115 chromosome, complete genome6e-103375
NC_002655:3538656:3575873357587335771111239Escherichia coli O157:H7 EDL933, complete genomehypothetical protein6e-103375
NC_002695:3468873:3508583350858335098211239Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein6e-103375
NC_000913:2746886:278566427856642786260597Escherichia coli K12, complete genomeconserved protein (pseudogene)4e-101369
AC_000091:2747520:278629827862982786894597Escherichia coli W3110 DNA, complete genome4e-101369
NC_013361:3651150:366600936660093666605597Escherichia coli O26:H11 str. 11368 chromosome, complete genome4e-101369
NC_013364:3339768:335118333511833351779597Escherichia coli O111:H- str. 11128, complete genome4e-101369
NC_000913:2746886:278477027847702785456687Escherichia coli K12, complete genomehypothetical protein7e-64245
AC_000091:2747520:278540427854042786090687Escherichia coli W3110 DNA, complete genomehypothetical protein7e-64245
NC_011748:2973968:299899329989932999265273Escherichia coli 55989, complete genomehypothetical protein3e-45183
CU928160:2818750:283321328332132833485273Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-45183
NC_000913:2746886:278639927863992786671273Escherichia coli K12, complete genomehypothetical protein3e-45183
CU928145:2973968:299899329989932999265273Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein3e-45183
AC_000091:2747520:278703327870332787305273Escherichia coli W3110 DNA, complete genomehypothetical protein3e-45183
NC_011741:2818750:283321328332132833485273Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-45183
NC_013364:3339768:335191833519183352190273Escherichia coli O111:H- str. 11128, complete genome3e-45183
NC_016822:3065426:308013330801333080405273Shigella sonnei 53G, complete genomealpha amylase3e-45183
NC_011415:3006794:302239430223943022666273Escherichia coli SE11 chromosome, complete genomehypothetical protein8e-45181
NC_004741:2741971:275561727556172755889273Shigella flexneri 2a str. 2457T, complete genomehypothetical protein5e-43176
NC_004741:2741971:275448627544862754674189Shigella flexneri 2a str. 2457T, complete genome9e-28125
NC_011601:2998326:301416130141613014541381Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-22107
CU928145:2973968:299873229987322998854123Escherichia coli 55989 chromosome, complete genomefragment of putative Alpha-amylase (part 2)4e-1686.7
NC_011748:2973968:299873229987322998854123Escherichia coli 55989, complete genome4e-1686.7
NC_004741:2741971:275398827539882754437450Shigella flexneri 2a str. 2457T, complete genome5e-1273.2