Pre_GI: BLASTP Hits

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Query: NC_006905:3780000:3797005 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 3797005, End: 3798000, Length: 996

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3590323:370755037075503708545996Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-153543
NC_014837:33014:594465944660441996Pantoea sp. At-9b chromosome, complete genomeacyltransferase 31e-107389
NC_013971:3713000:372659137265913727586996Erwinia amylovora ATCC 49946 chromosome, complete genomemembrane protein7e-106384
NC_013961:3709800:372633337263333727328996Erwinia amylovora, complete genomeInner membrane protein yiaH7e-106384
NC_012214:3931824:394827639482763949271996Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein1e-105383
NC_015224:4426167:445065844506584451650993Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein1e-102372
NC_016779:5189139:5189139518913951901701032Bacillus cereus F837/76 chromosome, complete genomehypothetical protein3e-1582.8
NC_005957:5203915:5203915520391552049461032Bacillus thuringiensis serovar konkukian str. 97-27, completehypothetical protein2e-1480.1
NC_020418:3102460:3107917310791731089301014Morganella morganii subsp. morganii KT, complete genomehypothetical protein4e-1375.9
NC_014500:2402881:2413290241329024142941005Dickeya dadantii 3937 chromosome, complete genomeIntegral membrane protein1e-0964.3
NC_012912:2426520:2439867243986724408711005Dickeya zeae Ech1591, complete genomeacyltransferase 34e-0859.3
NC_013592:2338403:2348467234846723494711005Dickeya dadantii Ech586, complete genomeacyltransferase 39e-0858.2
NC_013716:1138441:114852011485201149518999Citrobacter rodentium ICC168, complete genomeputative prophage membrane protein2e-0757