Pre_GI: BLASTP Hits

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Query: NC_006905:368942:380879 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 380879, End: 381052, Length: 174

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:364981:374228374228374401174Salmonella enterica subsp. enterica serovar Typhimurium strC3-like protein5e-27119
NC_012125:1330066:134233113423311342504174Salmonella enterica subsp. enterica serovar Paratyphi C strainC3-like protein2e-26117
NC_011147:2496808:251627225162722516424153Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-1580.1
NC_006511:2501500:252073625207362520888153Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-1580.1
NC_011083:374000:383040383040383168129Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,lambda phage ciii6e-1476.3
NC_013941:975353:986224986224986460237Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeantitermination protein3e-1063.9
NC_007946:1239278:124642712464271246591165Escherichia coli UTI89, complete genomelambda regulatory protein CIII1e-0962
NC_004431:1401681:140857214085721408736165Escherichia coli CFT073, complete genomeLambda Regulatory protein CIII1e-0962
NC_011742:1177946:118740311874031187567165Escherichia coli S88 chromosome, complete genomeRegulatory protein CIII1e-0962
NC_013941:3300000:330545733054573305621165Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeLambda phage regulatory protein CIII1e-0962
NC_012947:3015985:302380130238013023965165Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLambda phage regulatory protein CIII1e-0962
NC_013361:1558423:156722415672241567364141Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage regulatory protein CIII2e-0961.2
NC_011601:2614691:262420626242062624337132Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeregulatory protein2e-0857.8
NC_007946:2625461:263340026334002633531132Escherichia coli UTI89, complete genomeputative host FtsH protease inhibitor of enterobacteria phage Sf62e-0857.8