Pre_GI: BLASTP Hits

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Query: NC_006905:368942:376576 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 376576, End: 377097, Length: 522

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:2053991:205482820548282055343516Salmonella enterica subsp. enterica serovar Enteritidis strphage protein6e-94342
NC_008312:7169309:7191009719100971921181110Trichodesmium erythraeum IMS101, complete genomehypothetical protein2e-1065.1
NC_010501:734363:7509297509297520321104Pseudomonas putida W619, complete genomeprotein of unknown function DUF2626e-0857
NC_014211:439611:4463004463004473611062Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidprotein of unknown function DUF2629e-0856.2
NC_013730:58840:6868468684697091026Spirosoma linguale DSM 74, complete genomeprotein of unknown function DUF2621e-0755.5
NC_011205:2938356:2945199294519929463591161Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein7e-0753.5
NC_009792:3245368:3253959325395932551431185Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0652.4
NC_016585:417979:4282044282044292861083Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencehypothetical protein9e-0649.7