Pre_GI: BLASTP Hits

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Query: NC_006905:368942:374946 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 374946, End: 376121, Length: 1176

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:3287671:330299633029963303583588Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-42174
NC_013364:2645438:265798926579892658792804Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-39163
NC_010067:2304313:232186323218632322444582Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-33143
NC_011205:609464:6195466195466206281083Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853Eaa protein2e-1894
NC_013364:1183000:118610011861001187095996Escherichia coli O111:H- str. 11128, complete genomehypothetical protein9e-1581.6
NC_008258:269806:279662279662280501840Shigella flexneri 5 str. 8401, complete genomeputative bacteriophage protein2e-1067
NC_017328:303987:312617312617313291675Shigella flexneri 2002017 chromosome, complete genomeputative bacteriophage protein8e-1065.1
NC_011601:2614691:262858426285842629216633Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-0963.9
NC_011601:717072:722714722714723346633Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-0963.9
NC_013361:1558423:156185315618531562764912Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-0963.5
NC_009800:289000:293833293833294474642Escherichia coli HS, complete genomehypothetical protein8e-0961.6
NC_011294:2053991:205626120562612057124864Salmonella enterica subsp. enterica serovar Enteritidis strphage protein2e-0860.1
NC_013008:3231414:324675732467573247374618Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-0654.3
NC_011353:3276734:329188632918863292503618Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-0654.3
NC_002655:1332961:133323813332381333861624Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by bacteriophage BP-933W2e-0654.3
NC_011601:717072:723556723556723951396Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein3e-0653.5
NC_016845:1285435:130060613006061301559954Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Eaa15e-0652.4