Pre_GI: BLASTP Hits

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Query: NC_006905:2857699:2864363 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 2864363, End: 2865349, Length: 987

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:2826624:284638028463802847219840Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-152538
NC_007912:909112:924353924353925216864Saccharophagus degradans 2-40, complete genomenucleotide-binding protein containing TIR -like domain-like3e-42172
NC_009254:637952:6886996886996898321134Burkholderia vietnamiensis G4 chromosome 3, complete sequencenucleotide-binding protein9e-41167
NC_013508:1491945:150599215059921506885894Edwardsiella tarda EIB202, complete genomepredicted nucleotide-binding protein containing TIR -like domain2e-40166
NC_004459:2443000:251914825191482520047900Vibrio vulnificus CMCP6 chromosome I, complete sequencePredicted nucleotide-binding protein2e-39162
NC_004547:3207776:323828032382803239092813Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein1e-37157
NC_010511:5424004:543090954309095431814906Methylobacterium sp. 4-46 chromosome, complete genomenucleotide-binding protein5e-37155
NC_015593:797675:808323808323809219897Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeNucleotide-binding protein TIR-like protein1e-36153
NC_011899:12699:341023410234926825Halothermothrix orenii H 168, complete genome1e-35150
NC_012660:5793200:580498958049895805441453Pseudomonas fluorescens SBW25 chromosome, complete genome2e-35149
NC_013440:6045708:6056153605615360579431791Haliangium ochraceum DSM 14365, complete genomeNucleotide-binding protein, predicted, TIR-like protein8e-35147
NC_014666:13876:198111981120680870Frankia sp. EuI1c chromosome, complete genomenucleotide-binding protein1e-27124
NC_009485:3461051:347096034709603471835876Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein8e-27121
NC_009051:1730104:174029817402981741206909Methanoculleus marisnigri JR1, complete genomenucleotide-binding protein containing TIR-like domain-like1e-25117
NC_007509:71954:923849238492767384Burkholderia sp. 383 chromosome 3, complete sequencenucleotide-binding protein containing TIR-like domain3e-23109
NC_003295:2787371:281548328154832816184702Ralstonia solanacearum GMI1000, complete genomehypothetical protein1e-20100
NC_014774:171500:200227200227201039813Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein2e-1893.2
NC_014774:1210004:124109612410961241908813Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein2e-1893.2
NC_013958:29548:421784217842963786Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequencenucleotide-binding protein containing TIR -like protein domain-like protein9e-1168.2
NC_012791:2832001:285597728559772856747771Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein6e-0962
NC_009445:6621996:664819266481926648395204Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein6e-0858.5
NC_013037:1587673:160142716014271602347921Dyadobacter fermentans DSM 18053, complete genomenucleotide-binding protein containing TIR -like domain-like protein8e-0754.7