Pre_GI: BLASTP Hits

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Query: NC_006856:95830:99298 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 99298, End: 100269, Length: 972

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004851:157675:163184163184164155972Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein1e-177622
NC_017319:155958:161915161915162817903Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein1e-162572
NC_009787:17344:190811908120007927Escherichia coli E24377A plasmid pETEC_35, complete sequencehypothetical protein4e-161567
NC_002128:35000:380753807538977903Escherichia coli O157:H7 str. Sakai plasmid pO157, completehypothetical protein4e-153540
NC_007414:56508:606506065061552903Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein4e-153540
NC_014842:19411:477094770948668960Pantoea sp. At-9b plasmid pPAT9B05, complete sequencehypothetical protein3e-75282
NC_009832:4482500:449663544966354497576942Serratia proteamaculans 568, complete genomeprotein of unknown function DUF12818e-41167
NC_014029:331919:391532391532392455924Yersinia pestis Z176003 chromosome, complete genomehypothetical protein2e-40166
NC_010554:2789722:2797323279732327983241002Proteus mirabilis HI4320, complete genomeplasmid-related protein9e-40164
NC_012962:3864000:3867825386782538688651041Photorhabdus asymbiotica, complete genomeHypothetical protein yfaB4e-39162
NC_014304:77715:780237802378961939Erwinia billingiae Eb661 plasmid pEB102, complete sequenceconserved uncharacterized protein9e-39160
NC_009832:426993:444600444600445523924Serratia proteamaculans 568, complete genomeprotein of unknown function DUF12813e-38159
NC_012779:346998:366569366569367504936Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-38159
NC_011745:3443371:345761934576193458599981Escherichia coli ED1a chromosome, complete genomehypothetical protein5e-38158
NC_009832:4564752:457748645774864578409924Serratia proteamaculans 568, complete genomeprotein of unknown function DUF12819e-38157
NC_013892:1503162:151878915187891519712924Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-36152
NC_010102:4557037:457016845701684571121954Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-36151
NC_016816:4129299:417266241726624173606945Pantoea ananatis LMG 5342, complete genomehypothetical protein1e-34147
NC_012214:537000:553141553141554082942Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein2e-32140
NC_012214:3303955:330477633047763305717942Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein2e-32140
NC_014121:489500:511208511208512158951Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-32138
NC_009801:3374501:339092633909263391753828Escherichia coli E24377A, complete genometransposition helper protein, IS21 family1e-0757.4