Pre_GI: BLASTP Hits

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Query: NC_006856:26438:29220 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 29220, End: 29912, Length: 693

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017171:1331794:1337869133786913397431875Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomehypothetical protein1e-114411
NC_017162:1228723:1245025124502512460561032Acinetobacter baumannii 1656-2 chromosome, complete genometransposase2e-112405
NC_009838:81913:1075071075071085801074Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceputative transposase2e-112405
NC_009649:16907:333133331333945633Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,transposase5e-112403
NC_017387:247462:271905271905272516612Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometransposase IS269e-112402
NC_017387:247462:261233261233261844612Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometransposase IS269e-112402
NC_017171:1331794:134830313483031348908606Acinetobacter baumannii MDR-ZJ06 chromosome, complete genometransposase1e-111402
NC_017162:1228723:123581412358141236425612Acinetobacter baumannii 1656-2 chromosome, complete genometransposase3e-111401
NC_003384:157158:168741168741169361621Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidputative transposase5e-111400
NC_017162:1228723:125179312517931252461669Acinetobacter baumannii 1656-2 chromosome, complete genometransposase4e-110397
NC_009838:81913:106376106376107197822Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceputative transposase6e-29127
NC_011586:268927:285645285645286466822Acinetobacter baumannii AB0057 chromosome, complete genomeinsertion sequence IS61007e-29127
NC_011586:268927:3043543043543072902937Acinetobacter baumannii AB0057 chromosome, complete genometransposase IS263e-1272.4
NC_011083:1524337:153030815303081530769462Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,multidrug efflux protein3e-1168.6