Pre_GI: BLASTP Hits

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Query: NC_006511:792543:802782 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 802782, End: 803144, Length: 363

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:792489:802728802728803090363Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-65246
NC_012125:326909:3269093269093316904782Salmonella enterica subsp. enterica serovar Paratyphi C strainRhs family protein4e-1063.5
NC_006905:326517:3270393270393318204782Salmonella enterica subsp. enterica serovar Choleraesuis strRhs-family protein1e-0961.6
CP002185:3964500:3964633396463339688684236Escherichia coli W, complete genomeType I RHS protein5e-0856.6
CP002516:119935:1372051372051414404236Escherichia coli KO11, complete genomeYD repeat protein5e-0856.6
NC_011415:4006500:4006702400670240109374236Escherichia coli SE11 chromosome, complete genomeRhs core protein5e-0856.6
NC_016902:119935:1372051372051414404236Escherichia coli KO11FL chromosome, complete genomeYD repeat protein5e-0856.6
AP010958:4707712:4717857471785747220264170Escherichia coli O103:H2 str. 12009 DNA, complete genomeRhs core protein with extension4e-0856.6
NC_013353:4707712:4717857471785747220264170Escherichia coli O103:H2 str. 12009, complete genomeRhs core protein with extension4e-0856.6
NC_012947:248000:2870612870612912964236Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-0856.6
NC_012967:3549880:3549880354988035541154236Escherichia coli B str. REL606 chromosome, complete genomerhsB element core protein RshB4e-0856.6
AC_000091:3995233:4016988401698840212234236Escherichia coli W3110 DNA, complete genomerhsB element core protein RshB4e-0856.6
NC_009801:4073968:4074805407480540790404236Escherichia coli E24377A, complete genomeprotein rhsB precursor5e-0856.6