Pre_GI: BLASTP Hits

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Query: NC_006155:2893802:2899666 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 2899666, End: 2900484, Length: 819

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010634:2810815:281667928166792817497819Yersinia pseudotuberculosis PB1/+, complete genomeshikimate dehydrogenase substrate binding subunit5e-149526
NC_009921:8549757:861204286120428612860819Frankia sp. EAN1pec, complete genomeShikimate dehydrogenase substrate binding domain protein2e-93342
NC_012779:3176820:323099232309923231780789Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-89328
NC_009512:2238437:225730122573012258122822Pseudomonas putida F1, complete genomeShikimate dehydrogenase substrate binding, N-terminal domain protein2e-87322
NC_002947:4293252:429723042972304298069840Pseudomonas putida KT2440, complete genomeshikimate 5-dehydrogenase1e-86319
NC_001263:72681:783807838079201822Deinococcus radiodurans R1 chromosome 1, complete sequenceshikimate 5-dehydrogenase3e-81301
NC_014329:844622:849345849345850160816Corynebacterium pseudotuberculosis FRC41 chromosome, completeshikimate 5-dehydrogenase1e-67256
NC_016932:832748:837471837471838286816Corynebacterium pseudotuberculosis 316 chromosome, complete genomeshikimate 5-dehydrogenase9e-67253
NC_006087:28490:300263002630745720Leifsonia xyli subsp. xyli str. CTCB07, complete genomeshikimate 5-dehydrogenase5e-59227
NC_016781:844613:849336849336850037702Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeshikimate 5-dehydrogenase4e-56218
NC_012108:2542328:254495725449572545772816Desulfobacterium autotrophicum HRM2, complete genomeAroE11e-23110
NC_014804:341663:351086351086351904819Thermococcus barophilus MP chromosome, complete genomeshikimate 5-dehydrogenase I alpha5e-23108
NC_000868:416958:432656432656433450795Pyrococcus abyssi GE5, complete genomeshikimate 5-dehydrogenase6e-22104
NC_008593:2281896:230243323024332303245813Clostridium novyi NT, complete genomeshikimate 5-dehydrogenase1e-20100
NC_015519:1888917:189192318919231892795873Tepidanaerobacter sp. Re1 chromosome, complete genomeShikimate dehydrogenase5e-2098.2
NC_015425:2528549:255259725525972553409813Clostridium botulinum BKT015925 chromosome, complete genomeshikimate 5-dehydrogenase6e-2097.8
NC_008262:784878:814079814079814894816Clostridium perfringens SM101, complete genomeshikimate 5-dehydrogenase6e-1994.7
NC_014355:399938:404381404381405235855Candidatus Nitrospira defluvii, complete genomeshikimate 5-dehydrogenase2e-1893.2
NC_003366:863437:875075875075875890816Clostridium perfringens str. 13, complete genomeshikimate 5-dehydrogenase7e-1891.3
NC_008261:817295:828901828901829716816Clostridium perfringens ATCC 13124, complete genomeshikimate 5-dehydrogenase6e-1891.3
NC_009785:1414892:141729314172931418150858Streptococcus gordonii str. Challis substr. CH1, complete genomeshikimate 5-dehydrogenase2e-1789.7
NC_009922:42696:466674666747527861Alkaliphilus oremlandii OhILAs, complete genomeshikimate 5-dehydrogenase3e-1789
NC_014221:554764:561386561386562216831Truepera radiovictrix DSM 17093 chromosome, complete genomeshikimate 5-dehydrogenase5e-1788.2
NC_008258:1750964:175531417553141756063750Shigella flexneri 5 str. 8401, complete genomeputative oxidoreductase5e-1788.2
NC_004741:1792442:179361417936141794480867Shigella flexneri 2a str. 2457T, complete genomeshikimate 5-dehydrogenase7e-1787.8
NC_015580:1302000:132602613260261326904879Novosphingobium sp. PP1Y, complete genomeshikimate 5-dehydrogenase9e-1787.4
NC_015387:1091403:111343611134361114248813Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeShikimate dehydrogenase2e-1686.3
NC_012880:1585255:158825915882591589128870Dickeya dadantii Ech703, complete genomeShikimate dehydrogenase substrate binding domain protein1e-1583.6
NC_015474:252390:275352275352276173822Pyrococcus sp. NA2 chromosome, complete genomeshikimate 5-dehydrogenase1e-1583.6
NC_015151:1403500:140835914083591409162804Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeshikimate dehydrogenase substrate binding domain protein3e-1582.4
NC_011979:3712845:373034837303483731220873Geobacter sp. FRC-32, complete genomeshikimate 5-dehydrogenase5e-1581.6
NC_009664:3969609:397398339739833974843861Kineococcus radiotolerans SRS30216, complete genomeShikimate dehydrogenase substrate binding domain protein1e-1480.9
NC_009952:3596399:363194536319453632781837Dinoroseobacter shibae DFL 12, complete genomeshikimate dehydrogenase1e-1480.9
NC_007181:141299:149768149768150559792Sulfolobus acidocaldarius DSM 639, complete genomeshikimate/quinate 5-dehydrogenase1e-1480.5
NC_019977:253895:258493258493259314822Methanomethylovorans hollandica DSM 15978, complete genomeshikimate 5-dehydrogenase2e-1480.1
NC_017291:829577:8295778295778310101434Chlamydophila psittaci C19/98 chromosome, complete genomebifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein4e-1478.6
NC_015470:831863:8318638318638332961434Chlamydophila psittaci 6BC chromosome, complete genomebifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein4e-1478.6
NC_013730:834500:860262860262861005744Spirosoma linguale DSM 74, complete genomeShikimate dehydrogenase substrate binding domain protein7e-1477.8
NC_007955:2074844:209948120994812100290810Methanococcoides burtonii DSM 6242, complete genomeshikimate 5-dehydrogenase7e-1477.8
NC_010814:1739706:176001217600121760893882Geobacter lovleyi SZ, complete genomeshikimate 5-dehydrogenase3e-1375.9
NC_014122:549932:588069588069588902834Methanocaldococcus infernus ME chromosome, complete genomeshikimate 5-dehydrogenase3e-1272.4
NC_015977:2807782:284480328448032845672870Roseburia hominis A2-183 chromosome, complete genomeshikimate 5-dehydrogenase8e-1271.2
NC_007963:317291:332550332550333416867Chromohalobacter salexigens DSM 3043, complete genomeShikimate 5-dehydrogenase3e-1169.3
NC_015563:2702787:270994927099492710788840Delftia sp. Cs1-4 chromosome, complete genomeShikimate dehydrogenase8e-1167.8
NC_007802:179780:187014187014187850837Jannaschia sp. CCS1, complete genomeShikimate 5-dehydrogenase1e-1067.4
NC_003106:2272313:228195322819532282735783Sulfolobus tokodaii str. 7, complete genomehypothetical shikimate 5-dehydrogenase2e-1066.2
NC_014614:2500301:250359825035982504434837Clostridium sticklandii, complete genomeShikimate dehydrogenase3e-1065.9
NC_008044:3024125:302898630289863029816831Silicibacter sp. TM1040, complete genomeshikimate 5-dehydrogenase8e-1064.3
NC_015846:924087:926519926519927265747Capnocytophaga canimorsus Cc5 chromosome, complete genomeshikimate dehydrogenase1e-0963.9
NC_010125:1:145151451515372858Gluconacetobacter diazotrophicus PAl 5, complete genomeputative shikimate dehydrogenase2e-0962.8
NC_003454:677699:683152683152683901750Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeShikimate 5-dehydrogenase8e-0960.8
NC_015518:1095879:110422611042261105014789Acidianus hospitalis W1 chromosome, complete genomeShikimate dehydrogenase substrate binding domain-containing protein9e-0960.8
NC_005042:1719055:173579817357981736700903Prochlorococcus marinus subsp. marinus str. CCMP1375, completeShikimate 5-dehydrogenase2e-0859.7
NC_014727:95875:953469534695906561Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,shikimate 5-dehydrogenase and fad-dependent oxidase domain3e-0859.3
NC_014960:216965:223354223354224232879Anaerolinea thermophila UNI-1, complete genomeshikimate dehydrogenase5e-0858.5
NC_017518:2041282:205627220562722057081810Neisseria meningitidis NZ-05/33 chromosome, complete genomeshikimate 5-dehydrogenase6e-0858.2
NC_017514:1885154:190204319020431902852810Neisseria meningitidis M01-240149 chromosome, complete genomeshikimate 5-dehydrogenase6e-0858.2
NC_011035:1564821:158304715830471583886840Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative shikimate dehydrogenase1e-0757
NC_017511:1467090:148588314858831486722840Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative shikimate dehydrogenase1e-0757
NC_013282:3962188:397488539748853975703819Cronobacter turicensis, complete genomeShikimate dehydrogenase1e-0757
NC_002946:1556000:157380215738021574611810Neisseria gonorrhoeae FA 1090, complete genomeputative shikimate dehydrogenase1e-0757
NC_017513:1845069:186073918607391861548810Neisseria meningitidis G2136 chromosome, complete genomeshikimate 5-dehydrogenase2e-0756.6
NC_015573:1979202:198059219805921981548957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeShikimate dehydrogenase2e-0756.6
NC_015696:1853979:186852718685271869369843Francisella sp. TX077308 chromosome, complete genomeshikimate 5-dehydrogenase I alpha3e-0755.8
NC_010557:316000:330534330534331370837Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceShikimate dehydrogenase substrate binding domain protein3e-0755.8
NC_009440:1810301:181730518173051818123819Metallosphaera sedula DSM 5348 chromosome, complete genomeshikimate dehydrogenase5e-0755.1
NC_002695:4153394:416503241650324165850819Escherichia coli O157:H7 str. Sakai, complete genomeshikimate 5-dehydrogenase5e-0755.1
NC_015424:4251369:427545242754524276273822Aeromonas veronii B565 chromosome, complete genomeShikimate dehydrogenase5e-0755.1
NC_008010:105665:115638115638116507870Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceShikimate dehydrogenase substrate binding-like7e-0754.7
NC_014924:3065430:308387430838743084725852Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeshikimate 5-dehydrogenase1e-0653.9
NC_007614:620500:620577620577621410834Nitrosospira multiformis ATCC 25196 chromosome 1, completeshikimate 5-dehydrogenase2e-0653.5
NC_016633:1798758:181916918191691820050882Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeshikimate 5-dehydrogenase2e-0653.1
CP002185:3627992:364298936429893643807819Escherichia coli W, complete genomedehydroshikimate reductase, NAD(P)-binding protein2e-0653.1
NC_009921:8549757:855440285544028555274873Frankia sp. EAN1pec, complete genomeShikimate dehydrogenase substrate binding domain protein3e-0652.8
NC_006511:3364448:337965333796533380471819Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCshikimate 5-dehydrogenase7e-0651.2
NC_010120:1814592:183351518335151834324810Neisseria meningitidis 053442, complete genomeshikimate dehydrogenase7e-0651.2
NC_003116:2063500:207914620791462079961816Neisseria meningitidis Z2491, complete genomeshikimate dehydrogenase9e-0650.8