Pre_GI: BLASTP Hits

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Query: NC_005140:883857:898577 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 898577, End: 898837, Length: 261

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014839:12519:1408714087154391353Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceIntegrase catalytic region2e-1581.3
NC_009783:2306953:231720523172052317666462Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein8e-0959.3
NC_008391:699222:7035757035757050651491Burkholderia cepacia AMMD chromosome 2, complete sequenceIntegrase, catalytic region5e-0856.2
NC_010508:1865602:1866923186692318684131491Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceIntegrase catalytic region1e-0651.6
NC_012724:1914740:192975019297501929938189Burkholderia glumae BGR1 chromosome 1, complete genome2e-0651.2
NC_012720:114489:1225831225831240731491Burkholderia glumae BGR1 plasmid bglu_3p, complete sequenceIntegrase, catalytic region4e-0650.1
NC_002516:2436304:2443161244316124443661206Pseudomonas aeruginosa PAO1, complete genomehypothetical protein4e-0650.1
NC_008391:699222:705266705266705760495Burkholderia cepacia AMMD chromosome 2, complete sequencehypothetical protein5e-0649.7