Pre_GI: BLASTP Hits

Some Help

Query: NC_005139:1784000:1894583 Vibrio vulnificus YJ016 chromosome I, complete sequence

Start: 1894583, End: 1895464, Length: 882

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012791:2832001:2851530285153028530321503Variovorax paradoxus S110 chromosome 1, complete genomeTPR repeat-containing protein7e-38157
NC_012997:1820734:184479118447911845621831Teredinibacter turnerae T7901, complete genomehypothetical protein2e-28126
NC_020126:4084114:4110934411093441119801047Myxococcus stipitatus DSM 14675, complete genomehypothetical protein2e-22106
NC_013166:32474:758397583976702864Kangiella koreensis DSM 16069, complete genomenucleotide-binding protein containing TIR-like domain8e-21101
NC_009659:1050532:111990511199051120816912Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-1892.8
NC_010510:388885:407939407939408850912Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completecyclic nucleotide-binding6e-1788.2
NC_013037:1587673:160142716014271602347921Dyadobacter fermentans DSM 18053, complete genomenucleotide-binding protein containing TIR -like domain-like protein2e-1377
NC_020125:1802000:181015918101591811109951Riemerella anatipestifer RA-CH-2, complete genomehypothetical protein1e-1067
NC_014738:2011554:202679420267942027744951Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,nucleotide-binding protein containing tir -like domain-like protein1e-1067