Pre_GI: BLASTP Hits

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Query: NC_004851:157675:179387 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence

Start: 179387, End: 179605, Length: 219

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013353:3853082:3855775385577538573161542Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein7e-34142
AP010958:3853082:3855775385577538573161542Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein7e-34142
NC_010067:892729:9173789173789189491572Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-1786.3
NC_005126:1223042:1239230123923012407351506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0962
NC_005126:3630459:3636182363618236376871506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0962
NC_005126:3812054:3858607385860738601121506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0962
NC_005126:4857500:4863573486357348650781506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0962
NC_004463:1898648:1941438194143819430421605Bradyrhizobium japonicum USDA 110, complete genomeputative transposase1e-0858.9
NC_015850:217495:2246452246452262071563Acidithiobacillus caldus SM-1 chromosome, complete genometransposase1e-0652
NC_015850:1850741:1861779186177918633411563Acidithiobacillus caldus SM-1 chromosome, complete genometransposase1e-0652
NC_015850:1614965:1616837161683716183991563Acidithiobacillus caldus SM-1 chromosome, complete genometransposase1e-0652
NC_015850:1060000:1060641106064110622031563Acidithiobacillus caldus SM-1 chromosome, complete genometransposase1e-0652
NC_015851:181721:2019232019232034851563Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposase2e-0651.2
NC_011894:6418000:6419867641986764213841518Methylobacterium nodulans ORS 2060, complete genometransposase IS666e-0649.7
NC_011894:4360577:4384195438419543857121518Methylobacterium nodulans ORS 2060, complete genometransposase IS666e-0649.7
NC_011892:77975:1104101104101119271518Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetransposase IS666e-0649.7