Pre_GI: BLASTP Hits

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Query: NC_004741:4160500:4184011 Shigella flexneri 2a str. 2457T, complete genome

Start: 4184011, End: 4184370, Length: 360

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014618:1700784:170820717082071708566360Enterobacter cloacae SCF1 chromosome, complete genomeHicB family protein2e-50197
NC_020063:2785652:278777027877702788126357Enterobacteriaceae bacterium strain FGI 57, complete genomeprotein encoded in hypervariable junctions of pilus gene clusters5e-23106
NC_007517:2926792:294187129418712942209339Geobacter metallireducens GS-15, complete genomeHicB5e-2096.3
NC_017150:853708:865520865520865852333Acetobacter pasteurianus IFO 3283-01-42C, complete genometoxin-antitoxin systems (TAS) HicB4e-1890.1
NC_008343:1699132:170223617022361702568333Granulibacter bethesdensis CGDNIH1, complete genomehicB2e-1684.3
NC_014973:54449:663826638266675294Geobacter sp. M18 chromosome, complete genome8e-1579
NC_020211:4598217:460543546054354605779345Serratia marcescens WW4, complete genomeaddiction module, HicB-related protein3e-1373.6
NC_012918:3203136:322450532245053224729225Geobacter sp. M21 chromosome, complete genome3e-1270.9