Pre_GI: BLASTP Hits

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Query: NC_004741:3240909:3250714 Shigella flexneri 2a str. 2457T, complete genome

Start: 3250714, End: 3251016, Length: 303

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:3224721:323429132342913234830540Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-55212
NC_011748:3608917:362143036214303621969540Escherichia coli 55989, complete genomehypothetical protein5e-53206
CU928145:3608917:362143036214303621969540Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein5e-53206
NC_016902:613462:619976619976620515540Escherichia coli KO11FL chromosome, complete genomehypothetical protein3e-52203
CP002516:613462:619976619976620515540Escherichia coli KO11, complete genomehypothetical protein3e-52203
CP002185:3475991:348555834855583486097540Escherichia coli W, complete genomehypothetical protein3e-52203
NC_012947:630757:639112639112639651540Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein7e-52202
NC_012759:3143455:315302431530243153563540Escherichia coli BW2952 chromosome, complete genomehypothetical protein7e-52202
NC_010473:3354052:336362133636213364160540Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein7e-52202
NC_000913:3256307:326587632658763266415540Escherichia coli K12, complete genomehypothetical protein7e-52202
NC_010468:613812:622167622167622706540Escherichia coli ATCC 8739, complete genomehypothetical protein7e-52202
AC_000091:3258377:326770932677093268248540Escherichia coli W3110 DNA, complete genomehypothetical protein7e-52202
NC_012967:3191319:320088832008883201427540Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein7e-52202
CU928160:3344746:335431533543153354854540Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein7e-52202
NC_013941:3884725:389721738972173897777561Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-52202
NC_002695:3994970:400746240074624008022561Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-52202
NC_009801:3595001:360271036027103603270561Escherichia coli E24377A, complete genomehypothetical protein4e-52202
NC_009800:3307123:331667133166713317231561Escherichia coli HS, complete genomehypothetical protein4e-52202
NC_011415:3523364:353585635358563536416561Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-52202
NC_011741:3344746:335431533543153354854540Escherichia coli IAI1 chromosome, complete genomehypothetical protein7e-52202
NC_011751:3710786:372330037233003723839540Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-51201
NC_011750:3768692:378120537812053781744540Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-51201
NC_010498:3488513:349808234980823498621540Escherichia coli SMS-3-5, complete genomehypothetical protein2e-51201