Pre_GI: BLASTP Hits

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Query: NC_004631:685357:706983 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 706983, End: 707183, Length: 201

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011283:2836000:2880660288066028817781119Klebsiella pneumoniae 342 chromosome, complete genome3e-24110
NC_015663:4735808:4743545474354547448101266Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA polymerase V subunit UmuC6e-24109
NC_016810:2027311:2037460203746020387281269Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein5e-24109
NC_016856:2085283:2091297209129720925651269Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA polymerase V subunit UmuC5e-24109
NC_016857:2027311:2037460203746020387281269Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA polymerase V subunit UmuC5e-24109
NC_016863:2029340:2039489203948920407571269Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA polymerase V subunit UmuC5e-24109
NC_017046:2026672:2036821203682120380891269Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA repair protein5e-24109
NC_004631:948054:9817399817399830071269Salmonella enterica subsp. enterica serovar Typhi Ty2, completeDNA polymerase IV4e-24109
NC_016832:948029:9794149794149806821269Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-24109
NC_015663:4488058:4499510449951045007751266Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA polymerase V subunit UmuC1e-22105
NC_009648:1541699:1596110159611015971981089Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDNA polymerase V subunit UmuC9e-23105
NC_009436:2395913:2403234240323424045021269Enterobacter sp. 638, complete genomeDNA polymerase V subunit UmuC1e-22104
NC_016514:2476359:2487016248701624882841269Enterobacter cloacae EcWSU1 chromosome, complete genomeUmuC1e-22104
NC_021066:2197490:2204060220406022053251266Raoultella ornithinolytica B6, complete genomeDNA polymerase V subunit UmuC3e-22103
NC_009792:1739970:1746105174610517473701266Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-22103
NC_015761:1599000:1604619160461916058841266Salmonella bongori NCTC 12419, complete genomeDNA repair protein4e-22103
NC_009801:1296488:1321867132186713231351269Escherichia coli E24377A, complete genomeprotein UmuC2e-21101
NC_010473:1245284:1270650127065012719181269Escherichia coli str. K-12 substr. DH10B, complete genomeDNA polymerase V, subunit C2e-21101
NC_012967:1205985:1231336123133612326041269Escherichia coli B str. REL606 chromosome, complete genomeDNA polymerase V subunit UmuC2e-21101
NC_011751:1446073:1477461147746114787291269Escherichia coli UMN026 chromosome, complete genomeDNA polymerase V subunit UmuC2e-21101
NC_011283:3177350:3185304318530431865691266Klebsiella pneumoniae 342 chromosome, complete genomeDNA polymerase V subunit UmuC3e-21100
NC_013850:1887556:1936856193685619381211266Klebsiella variicola At-22 chromosome, complete genomeDNA-directed DNA polymerase3e-21100
NC_004431:1443968:1468502146850214697701269Escherichia coli CFT073, complete genomeDNA polymerase IV1e-2098.6
NC_011745:1287714:1311024131102413122861263Escherichia coli ED1a chromosome, complete genomeDNA polymerase V subunit UmuC1e-2098.6
NC_008253:1228485:1251657125165712529251269Escherichia coli 536, complete genomeUmuC protein1e-2098.6
NC_011601:1315746:1337755133775513390231269Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA polymerase V subunit UmuC1e-2098.6
NC_011742:1221416:1245958124595812472261269Escherichia coli S88 chromosome, complete genomeDNA polymerase V subunit UmuC1e-2098.6
NC_021066:1778000:1784007178400717852721266Raoultella ornithinolytica B6, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair3e-2097.1
NC_020260:1293860:1300668130066813019301263Cronobacter sakazakii Sp291, complete genomeDNA polymerase V subunit UmuC12e-1581.3
NC_009778:1222273:1227942122794212291261185Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-1580.9
NC_013282:1842412:1849918184991818511801263Cronobacter turicensis, complete genomeProtein umuC5e-1579.7
NC_020260:2725201:274122427412242741457234Cronobacter sakazakii Sp291, complete genomeDNA polymerase V subunit UmuC26e-1579.3
NC_009436:2056000:2070165207016520714271263Enterobacter sp. 638, complete genomeDNA-directed DNA polymerase1e-1375.5
NC_013282:1842412:185728818572881857563276Cronobacter turicensis, complete genomehypothetical protein2e-1374.7
NC_017047:1934430:1944000194400019452651266Rahnella aquatilis HX2 chromosome, complete genomeDNA polymerase V subunit UmuC3e-1373.9
NC_015566:3269469:3277699327769932789671269Serratia sp. AS12 chromosome, complete genomeDNA-directed DNA polymerase1e-1168.9
NC_020064:1962172:1974884197488419761521269Serratia marcescens FGI94, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair1e-1168.2
NC_016816:4129299:4158370415837041593981029Pantoea ananatis LMG 5342, complete genomeDNA polymerase V subunit UmuC4e-1167
NC_020260:1293860:131295213129521313224273Cronobacter sakazakii Sp291, complete genomehypothetical protein9e-1165.5
NC_009778:1222273:123632312363231236595273Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-1165.5
NC_009837:155284:157431157431157778348Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein2e-1064.3
NC_016860:4024000:403053540305354030786252Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-1064.3
NC_014305:97055:1108391108391121131275Erwinia billingiae Eb661 plasmid pEB170, complete sequenceDNA polymerase V subunit2e-1064.3
NC_010488:48868:660686606866457390Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence3e-1063.9
NC_016816:2925459:2936866293686629381281263Pantoea ananatis LMG 5342, complete genomeDNA polymerase V subunit UmuC3e-1063.9
NC_016445:89500:8996389963911351173Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA polymerase V5e-1063.2
NC_012668:3037345:3058519305851930596221104Vibrio cholerae MJ-1236 chromosome 1, complete sequenceerror-prone repair protein UmuC5e-1063.2
NC_010554:2646806:2725243272524327265111269Proteus mirabilis HI4320, complete genomeDNA repair protein9e-1062.4
NC_016832:4425330:4444352444435244456261275Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-1062
NC_012125:4536383:4555441455544145567151275Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA polymerase V subunit UmuC9e-1062
NC_003198:4453457:4472479447247944737531275Salmonella enterica subsp. enterica serovar Typhi str. CT18,DNA polymerase IV9e-1062
NC_011149:1236689:123973112397311240408678Salmonella enterica subsp. enterica serovar Agona str. SL483,transposase, Mutator family2e-0960.8
NC_014842:19411:4458444584458581275Pantoea sp. At-9b plasmid pPAT9B05, complete sequenceDNA-directed DNA polymerase1e-0858.2
NC_006905:1961774:197455019745501974717168Salmonella enterica subsp. enterica serovar Choleraesuis strerror-prone repair: component of DNA polymerase V with UmuD'5e-0856.6
NC_012125:1897611:191800919180091918176168Salmonella enterica subsp. enterica serovar Paratyphi C strainerror-prone repair: component of DNA polymerase V with UmuD'5e-0856.6
NC_008573:195317:233152233152233817666Shewanella sp. ANA-3 plasmid 1, complete sequenceumuC protein4e-0856.6
NC_010334:2615260:2641539264153926427921254Shewanella halifaxensis HAW-EB4, complete genomeDNA-directed DNA polymerase1e-0755.5
NC_010334:2615260:2621348262134826226011254Shewanella halifaxensis HAW-EB4, complete genomeDNA-directed DNA polymerase1e-0755.1
NC_020260:1293860:1306660130666013078411182Cronobacter sakazakii Sp291, complete genomeDNA polymerase V subunit UmuC13e-0753.9
NC_015731:2460248:2458963245896324602551293Nitrosomonas sp. Is79A3 chromosome, complete genomeUMUC domain-containing protein DNA-repair protein4e-0753.1
NC_015731:2400526:2420024242002424211001077Nitrosomonas sp. Is79A3 chromosome, complete genome5e-0753.1
NC_014394:2577949:2587767258776725890411275Gallionella capsiferriformans ES-2 chromosome, complete genomeDNA-directed DNA polymerase1e-0652
NC_008321:3815940:3837529383752938387851257Shewanella sp. MR-4, complete genomeDNA-directed DNA polymerase1e-0651.6
NC_012691:2097287:210098321009832101177195Tolumonas auensis DSM 9187, complete genome1e-0651.6
NC_016901:2661971:266591426659142666699786Shewanella baltica OS678 chromosome, complete genome3e-0650.4
NC_016901:5130147:5149362514936251506181257Shewanella baltica OS678 chromosome, complete genomeDNA-directed DNA polymerase3e-0650.4
NC_009665:5072413:5091613509161350928691257Shewanella baltica OS185 chromosome, complete genomeDNA-directed DNA polymerase3e-0650.4
NC_009997:5188221:5208740520874052099961257Shewanella baltica OS195, complete genomeDNA-directed DNA polymerase3e-0650.4
NC_015222:2475792:2495405249540524967001296Nitrosomonas sp. AL212 chromosome, complete genomeDNA-directed DNA polymerase3e-0650.4
NC_009997:2699644:270601227060122706782771Shewanella baltica OS195, complete genomeDNA-directed DNA polymerase5e-0649.7
NC_007005:1605000:1612927161292716142071281Pseudomonas syringae pv. syringae B728a, complete genomeDNA-directed DNA polymerase7e-0649.3