Pre_GI: BLASTP Hits

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Query: NC_004631:2842453:2861975 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 2861975, End: 2862235, Length: 261

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:2856596:287611828761182876378261Salmonella enterica subsp. enterica serovar Typhi str. CT18,doubtful CDS found within S. typhi pathogenicity island2e-45180
NC_006905:2960260:297763629776362977896261Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-45180
NC_016863:2974333:299259829925982992858261Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein7e-45178
NC_016860:3029272:304753830475383047798261Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-45178
NC_016856:3026426:304434530443453044605261Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein7e-45178
NC_011147:2814664:283419028341902834450261Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-44178
NC_006511:2819128:283865428386542838914261Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCdoubtful CDS found within S. typhi pathogenicity island1e-44178
NC_012125:2938519:295801929580192958243225Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein7e-38155
NC_016832:2829767:284927428492742849498225Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,CRISPR-associated helicase Cas37e-38155
NC_016857:3028421:304668430466843046908225Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein2e-37153
NC_016831:2867766:288603228860322886256225Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-37153
NC_011205:3050235:306850530685053068729225Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-37153
NC_010102:2967464:298709029870902987314225Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-37153
NC_011149:2912219:293263429326342932858225Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-37153
NC_011094:2913500:293131329313132931537225Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-37153
NC_011080:2982346:300061230006123000836225Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein3e-37153
NC_010067:84093:905729057290823252Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-31135