Pre_GI: BLASTP Hits

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Query: NC_004631:1182883:1187029 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1187029, End: 1187418, Length: 390

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1771432:179371417937141794103390Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulator2e-67253
NC_016832:1182496:118601311860131186390378Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-65246
NC_014121:1589389:162039116203911620783393Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeInvasion gene expression up-regulator6e-43172
NC_021066:839734:875516875516875908393Raoultella ornithinolytica B6, complete genomehypothetical protein8e-36148
NC_007404:974461:100538310053831005766384Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein4e-1373.2
NC_014532:2146466:215838721583872158773387Halomonas elongata DSM 2581, complete genomeinvasion gene expression up-regulator, SirB4e-0960.1
NC_008702:3375027:339261933926193393011393Azoarcus sp. BH72, complete genomeconserved hypothetical membrane protein3e-0857
NC_015581:1791658:180696318069631807334372Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeInvasion gene expression up-regulator SirB2e-0651.2