Pre_GI: BLASTP Hits

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Query: NC_004603:370320:375199 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 375199, End: 375918, Length: 720

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007484:79413:901489014890867720Nitrosococcus oceani ATCC 19707, complete genomeProtein of unknown function DUF5413e-69261
NC_017279:29737:522025220252903702Campylobacter jejuni subsp. jejuni IA3902 chromosome, completehypothetical protein3e-53208
NC_002163:29726:519675196752668702Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative periplasmic protein3e-53208
NC_003912:30265:509585095851659702Campylobacter jejuni RM1221, complete genomehypothetical protein3e-53208
NC_017281:30261:502405024050941702Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomePutative periplasmic protein3e-53208
NC_014006:344331:345596345596346300705Sphingobium japonicum UT26S chromosome 1, complete genomehypothetical protein9e-23107
NC_019960:1658657:167325116732511673997747Prevotella dentalis DSM 3688 chromosome 1, complete sequencehypothetical protein3e-1582.4
NC_002967:1844000:186526218652621866011750Treponema denticola ATCC 35405, complete genomehypothetical protein2e-1376.3
NC_008817:387408:387408387408388190783Prochlorococcus marinus str. MIT 9515, complete genomeprobable periplasmic protein4e-1065.1
NC_018868:2458122:246528424652842465697414Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-0963.5
NC_010296:5557853:556472855647285565477750Microcystis aeruginosa NIES-843, complete genomehypothetical protein6e-0754.3
NC_005071:588541:600395600395601174780Prochlorococcus marinus str. MIT 9313, complete genomeprobable periplasmic protein1e-0653.5