Pre_GI: BLASTP Hits

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Query: NC_004603:3080614:3086455 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 3086455, End: 3087672, Length: 1218

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016613:2628843:2639042263904226402621221Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein0748
NC_010334:2615260:2649018264901826502081191Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein4e-126451
NC_020054:4983691:500543950054395006245807Fibrella aestuarina BUZ 2 drat genomehypothetical protein2e-1067