Pre_GI: BLASTP Hits

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Query: NC_004603:230000:230277 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 230277, End: 230843, Length: 567

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009783:670449:672068672068672583516Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein4e-86317
NC_016613:221476:222253222253222771519Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein3e-70264
NC_013166:784339:785601785601786110510Kangiella koreensis DSM 16069, complete genomehypothetical protein4e-0858.2