Pre_GI: BLASTP Hits

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Query: NC_004603:1897532:1915251 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1915251, End: 1915658, Length: 408

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016613:1960811:196473919647391965146408Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein7e-72268
NC_012917:4328463:433349543334954333902408Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeOsmC family protein4e-1683.2
NC_011901:2914000:293460629346062935055450Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeOsmC/Ohr family protein3e-1477
NC_014654:2311818:232862323286232329036414Halanaerobium sp. 'sapolanicus' chromosome, complete genomeOsmC family protein1e-1272
NC_010175:2488000:250444225044422504873432Chloroflexus aurantiacus J-10-fl, complete genomeOsmC family protein1e-0755.1
NC_000868:643548:648191648191648631441Pyrococcus abyssi GE5, complete genomehypothetical protein2e-0754.3
NC_000961:1303446:131603213160321316478447Pyrococcus horikoshii OT3, complete genomehypothetical protein3e-0753.9
NC_009465:766893:796678796678797091414Candidatus Vesicomyosocius okutanii HA, complete genomeredox protein regulator5e-0753.1
NC_010718:1229355:123185712318571232288432Natranaerobius thermophilus JW/NM-WN-LF, complete genomeOsmC family protein1e-0651.6