Pre_GI: BLASTP Hits

Some Help

Query: NC_004603:1897532:1909404 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1909404, End: 1909598, Length: 195

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013456:1743046:176185317618531762110258Vibrio sp. Ex25 chromosome 1, complete genomehypothetical protein9e-1682
NC_004603:1897532:190522319052231905438216Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein4e-0960.1
NC_005139:1784000:186785018678501868035186Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein2e-0858.2