Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1140932 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1140932, End: 1141390, Length: 459

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012982:711122:723809723809724267459Hirschia baltica ATCC 49814, complete genomehypothetical protein7e-38155
NC_014834:2264108:226527722652772265717441Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein1e-37154
NC_017047:2042346:204830420483042048762459Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein9e-36149
NC_009441:3597020:362082636208263621260435Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein1e-35148
NC_014837:1144500:115653111565311156986456Pantoea sp. At-9b chromosome, complete genomehypothetical protein1e-32138
NC_015312:4658548:466850446685044668887384Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein6e-28122
NC_007777:1018824:102982510298251030253429Frankia sp. CcI3, complete genomehypothetical protein2e-25114
NC_012968:1594954:160585316058531606263411Methylotenera mobilis JLW8, complete genomehypothetical protein5e-25113
NC_016943:1735057:174440617444061744810405Blastococcus saxobsidens DD2, complete genomehypothetical protein2e-24111
NC_015514:3508022:352659835265983526987390Cellulomonas fimi ATCC 484 chromosome, complete genomehypothetical protein6e-1889.7