Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1139773 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1139773, End: 1140951, Length: 1179

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012982:711122:7226377226377238121176Hirschia baltica ATCC 49814, complete genomeUBA/THIF-type NAD/FAD binding protein5e-143507
NC_014834:2264108:2264108226410822652801173Rhodopseudomonas palustris DX-1 chromosome, complete genomeUBA/THIF-type NAD/FAD-binding protein9e-137486
NC_017047:2042346:2047132204713220483071176Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-135483
NC_014837:1144500:1155356115535611565311176Pantoea sp. At-9b chromosome, complete genomeUBA/THIF-type NAD/FAD-binding protein2e-135482
NC_012483:1813521:1837965183796518391461182Acidobacterium capsulatum ATCC 51196, complete genomeThiF domain protein3e-97355
NC_007777:1018824:1028638102863810298281191Frankia sp. CcI3, complete genomeUBA/THIF-type NAD/FAD binding fold6e-97354
NC_009441:3597020:3621241362124136224191179Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein2e-87323
NC_012968:1594954:1606263160626316074321170Methylotenera mobilis JLW8, complete genomeUBA/THIF-type NAD/FAD binding protein3e-87322
NC_018866:2033960:2047781204778120489621182Dehalobacter sp. DCA chromosome, complete genomeUBA/THIF-type NAD/FAD binding protein1e-80300
NC_018867:2063741:2077562207756220787431182Dehalobacter sp. CF chromosome, complete genomehypothetical protein1e-80300
NC_016943:1735057:1743184174318417444161233Blastococcus saxobsidens DD2, complete genomehypothetical protein7e-74278
NC_015514:3508022:3526993352699335281351143Cellulomonas fimi ATCC 484 chromosome, complete genomeUBA/THIF-type NAD/FAD binding protein3e-71269
NC_015312:4658548:4667195466719546685021308Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeUBA/THIF-type NAD/FAD binding protein6e-62238
NC_010501:2609567:261568926156892616264576Pseudomonas putida W619, complete genomeUBA/ThiF-type NAD/FAD binding protein1e-26120
NC_009464:225400:2330522330522345001449Uncultured methanogenic archaeon RC-I, complete genomehypothetical protein2e-0653.9