Pre_GI: BLASTP Hits

Some Help

Query: NC_004603:1115134:1129015 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1129015, End: 1129764, Length: 750

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004663:3285526:330264733026473303348702Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein3e-0962
NC_009659:1129066:113411011341101134820711Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein4e-0961.6
NC_015422:2078618:209136720913672092086720Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein1e-0757
NC_009615:2503465:250819525081952508917723Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-0756.2
NC_014008:3296708:329950432995043300265762Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeprotein of unknown function DUF883e-0755.8
NC_009614:1999130:200409520040952004799705Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein4e-0755.5
NC_015556:2265940:229809422980942298885792Pseudomonas fulva 12-X chromosome, complete genomeDomain of unknown function DUF889e-0754.3
NC_009614:978506:994796994796995518723Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein1e-0653.9
NC_012108:4454705:447318244731824473892711Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein2e-0652.8
NC_007514:335085:352031352031352825795Chlorobium chlorochromatii CaD3, complete genomehypothetical protein6e-0651.2