Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1116946 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1116946, End: 1117557, Length: 612

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013456:2528284:254238825423882542999612Vibrio sp. Ex25 chromosome 1, complete genomehypothetical protein7e-99359
NC_013971:3296272:329712532971253297703579Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein7e-0753.9
NC_013961:441719:473618473618474175558Erwinia amylovora, complete genomeUncharacterized protein yecA7e-0753.9
NC_015731:2460248:247640724764072477105699Nitrosomonas sp. Is79A3 chromosome, complete genomeyecA family protein9e-0753.5
NC_012214:474359:490333490333490890558Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein YecA1e-0652.8