Pre_GI: BLASTP Hits

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Query: NC_004578:895019:899534 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 899534, End: 900991, Length: 1458

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:4282840:4312613431261343141211509Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein0663
NC_005773:866157:8716228716228728391218Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein3e-179628
NC_007005:1605000:1607964160796416093701407Pseudomonas syringae pv. syringae B728a, complete genomePhage integrase2e-165582
NC_021150:3698696:3720275372027537215221248Azotobacter vinelandii CA6, complete genomephage integrase2e-111403
NC_012560:3698697:3720276372027637215231248Azotobacter vinelandii DJ, complete genomephage integrase2e-111403
NC_009656:4527457:4572105457210545733881284Pseudomonas aeruginosa PA7 chromosome, complete genomephage integrase family site specific recombinase3e-110399
NC_008463:4566976:4589452458945245907321281Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative integrase3e-109395
NC_009656:4527457:4657608465760846589571350Pseudomonas aeruginosa PA7 chromosome, complete genomephage integrase family site specific recombinase4e-105382
NC_007005:830467:8359468359468371091164Pseudomonas syringae pv. syringae B728a, complete genome7e-99361
NC_004129:5481629:5491834549183454931711338Pseudomonas fluorescens Pf-5, complete genomesite-specific recombinase, phage integrase family9e-98357
NC_014532:3596097:3632063363206336330971035Halomonas elongata DSM 2581, complete genomesite-specific recombinase, phage integrase family7e-58225
NC_011149:4677412:467964346796434680569927Salmonella enterica subsp. enterica serovar Agona str. SL483,phage integrase9e-57221
NC_010067:3056774:307494730749473075873927Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-56218
NC_004631:4494000:4511590451159045126031014Salmonella enterica subsp. enterica serovar Typhi Ty2, completeprobable phage integrase5e-51202
NC_003198:4513900:4528781452878145297941014Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable phage integrase5e-51202
NC_016832:4482437:4499858449985845008711014Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Phage integrase5e-51202
NC_013421:701005:744192744192745166975Pectobacterium wasabiae WPP163, complete genomeintegrase family protein8e-49195
NC_004547:667988:6873806873806884021023Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative phage integrase1e-47191
NC_009832:426993:4500724500724510851014Serratia proteamaculans 568, complete genomeintegrase family protein6e-47189
NC_014029:331919:4017584017584027711014Yersinia pestis Z176003 chromosome, complete genomeintegrase1e-46187
NC_012214:537000:557388557388558347960Erwinia pyrifoliae Ep1/96, complete genomeintegrase4e-46186
NC_009832:4482500:4486861448686144878921032Serratia proteamaculans 568, complete genomeintegrase family protein5e-46186
NC_010554:2789722:2793999279399927950691071Proteus mirabilis HI4320, complete genomephage integrase1e-45184
NC_009832:4564752:4572097457209745731101014Serratia proteamaculans 568, complete genomeintegrase family protein1e-45184
NC_014228:3505320:3510397351039735114131017Xenorhabdus nematophila ATCC 19061, complete genomeputative phage integrase3e-45183
NC_007005:830467:837051837051837347297Pseudomonas syringae pv. syringae B728a, complete genome2e-43177
NC_013892:1503162:1513287151328715142941008Xenorhabdus bovienii SS-2004 chromosome, complete genometyrosine recombinase-like7e-43175
NC_014228:3391500:3392691339269133936981008Xenorhabdus nematophila ATCC 19061, complete genomeputative phage integrase3e-42173
NC_012913:1041969:106300810630081063919912Aggregatibacter aphrophilus NJ8700, complete genomeintegrase1e-38161
NC_016845:4498097:450306445030644503864801Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Phage integrase6e-36152
NC_018691:2214464:221498022149802215912933Alcanivorax dieselolei B5 chromosome, complete genomeTyrosine recombinase xerC-like protein2e-35150
NC_011745:3405520:342713034271303427705576Escherichia coli ED1a chromosome, complete genomehypothetical protein8e-29128
NC_010939:1986263:200437920043792004945567Actinobacillus pleuropneumoniae serovar 7 str. AP76, completePutative integrase1e-24115
NC_009792:3245368:326544332654433265901459Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-24113
NC_006155:3805640:381032338103233810631309Yersinia pseudotuberculosis IP 32953, complete genome8e-1789
NC_003143:1059580:106425410642541064562309Yersinia pestis CO92, complete genomeintegrase (partial)8e-1789
NC_009792:3245368:326593832659383266234297Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-1582.4
NC_008149:3556999:356015835601583560406249Yersinia pestis Nepal516, complete genomeintegrase3e-1480.1
NC_015177:2642368:264457726445772645458882Pedobacter saltans DSM 12145 chromosome, complete genomeintegrase family protein2e-1273.9
NC_012962:3864000:3866446386644638676481203Photorhabdus asymbiotica, complete genomeProbable phage integrase3e-1273.6
NC_013939:1812259:181857918185791819487909Deferribacter desulfuricans SSM1, complete genometyrosine recombinase4e-1273.2
NC_019960:260997:272856272856273749894Prevotella dentalis DSM 3688 chromosome 1, complete sequencesite-specific recombinase XerD7e-1272.4
NC_014228:3391500:340640634064063406693288Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-1172
NC_015636:379000:394321394321395196876Methanothermococcus okinawensis IH1 chromosome, complete genomeintegrase family protein1e-1171.6
NC_010939:2085000:208550420855042086424921Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeTyrosine recombinase xerC4e-1170.1
NC_011901:39215:460684606846964897Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetyrosine recombinase XerC4e-1169.7
NC_010278:1989500:1989861198986119908711011Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,site-specific tyrosine recombinase XerC6e-1169.3
NC_009053:2025782:2028258202825820292681011Actinobacillus pleuropneumoniae L20, complete genomeTyrosine recombinase xerC8e-1168.9
NC_013792:109203:1100861100861111921107Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequencesite-specific tyrosine recombinase XerS1e-1068.6
NC_011297:1296968:129945012994501300340891Dictyoglomus thermophilum H-6-12, complete genometyrosine recombinase XerD2e-1067.8
NC_012660:4734363:474106147410614741222162Pseudomonas fluorescens SBW25 chromosome, complete genome3e-1067
NC_019960:1658657:168363516836351684561927Prevotella dentalis DSM 3688 chromosome 1, complete sequencesite-specific recombinase XerD3e-1067
NC_005877:864118:866941866941867771831Picrophilus torridus DSM 9790, complete genomeDNA integration/recombination/invertion protein5e-1066.2
NC_012969:2476318:251726225172622518158897Methylovorus glucosetrophus SIP3-4 chromosome, complete genometyrosine recombinase XerD9e-1065.5
NC_014733:2363838:238616023861602387056897Methylovorus sp. MP688 chromosome, complete genometyrosine recombinase xerd1e-0965.1
NC_007712:4023516:402260840226084023519912Sodalis glossinidius str. 'morsitans', complete genomephage integrase2e-0964.7
NC_014961:50814:7074470744717481005Desulfurococcus mucosus DSM 2162 chromosome, complete genomeintegrase family protein1e-0964.7
NC_007626:959684:994461994461995318858Magnetospirillum magneticum AMB-1, complete genomeIntegrase2e-0964.3
NC_012962:3864000:386616338661633866405243Photorhabdus asymbiotica, complete genomeputative integrase-like protein3e-0963.5
NC_017167:351069:3541843541843551881005Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1hypothetical protein4e-0963.2
NC_011567:2405000:240962824096282410551924Anoxybacillus flavithermus WK1, complete genomeSite-specific recombinase XerC7e-0962.4
NC_014738:1635000:163740416374041638279876Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,integrase family protein1e-0861.6
NC_008054:899441:8994418994419005171077Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeIntegrase/recombinase1e-0861.6
NC_012968:2228943:225078322507832251691909Methylotenera mobilis JLW8, complete genometyrosine recombinase XerD1e-0861.2
NC_009328:2083386:208757620875762088169594Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeintegrase/recombinase2e-0861.2
NC_014721:2135500:215045321504532151325873Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeintegrase family protein2e-0860.8
NC_016830:6589575:659239665923966593295900Pseudomonas fluorescens F113 chromosome, complete genomeprotein Sss3e-0860.5
NC_009253:829913:844973844973845854882Desulfotomaculum reducens MI-1 chromosome, complete genomephage integrase family protein3e-0860.5
NC_011295:33500:368853688537751867Coprothermobacter proteolyticus DSM 5265, complete genometyrosine recombinase XerD3e-0860.5
NC_014844:2056943:205864120586412059582942Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometyrosine recombinase XerC3e-0860.1
NC_009328:2161116:219679821967982197712915Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeintegrase/recombinase XerD3e-0860.1
NC_014727:966779:9835549835549846301077Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,site-specific recombinase xerd5e-0859.7
NC_020210:1704500:172499117249911725905915Geobacillus sp. GHH01, complete genomeputative transposase6e-0859.3
NC_008529:887008:8870088870088880571050Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeSite-specific recombinase XerD7e-0859.3
NC_012881:1802000:183366218336621834585924Desulfovibrio salexigens DSM 2638, complete genomeintegrase family protein9e-0858.9
NC_013959:156991:158331158331159230900Sideroxydans lithotrophicus ES-1 chromosome, complete genometyrosine recombinase XerC2e-0758.2
NC_002936:285527:3078873078873088971011Dehalococcoides ethenogenes 195, complete genomesite-specific recombinase, phage integrase family1e-0758.2
NC_006510:2910000:2939310293931029403231014Geobacillus kaustophilus HTA426, complete genomeintegrase/recombinase1e-0758.2
NC_020209:4549563:455237745523774553276900Pseudomonas poae RE*1-1-14, complete genomesite-specific tyrosine recombinase XerC2e-0757.8
NC_017025:311832:3299693299693310061038Flavobacterium indicum GPTSA100-9, complete genomeIntegrase/recombinase2e-0757.8
NC_011773:1277606:129570712957071296627921Bacillus cereus AH820 chromosome, complete genomeintegrase/recombinase2e-0757.4
NC_012225:345704:350763350763351692930Brachyspira hyodysenteriae WA1, complete genometyrosine recombinase XerD2e-0757.4
NC_016510:2426150:246974824697482470641894Flavobacterium columnare ATCC 49512 chromosome, complete genomeintegrase/recombinase XerC3e-0757
NC_009454:1246393:124639312463931247280888Pelotomaculum thermopropionicum SI, complete genomesite-specific recombinase XerD4e-0756.6
NC_015638:2045500:205110020511002051990891Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeTyrosine recombinase xerC4e-0756.6
NC_006510:1731939:175621217562121757117906Geobacillus kaustophilus HTA426, complete genomeintegrase/recombinase5e-0756.2
NC_017208:3816753:384609438460943846993900Bacillus thuringiensis serovar chinensis CT-43 chromosome, completesite-specific tyrosine recombinase XerC6e-0756.2
NC_014171:3726054:372995937299593730858900Bacillus thuringiensis BMB171 chromosome, complete genomesite-specific tyrosine recombinase6e-0755.8
NC_013062:627000:6310396310396321091071Flavobacteriaceae bacterium 3519-10, complete genomeProbable integrase7e-0755.8
NC_018721:2759700:276193527619352762825891Psychroflexus torquis ATCC 700755 chromosome, complete genometyrosine recombinase XerC7e-0755.8
NC_013061:987744:991477991477992361885Pedobacter heparinus DSM 2366, complete genomeintegrase family protein8e-0755.8
NC_010474:19256:351273512736020894Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequencephage integrase family1e-0655.5
NC_009615:3993187:399412339941233995028906Parabacteroides distasonis ATCC 8503 chromosome, complete genometyrosine type site-specific recombinase9e-0755.5
NC_019673:6394319:6415570641557064168291260Saccharothrix espanaensis DSM 44229 complete genomeputative DNA integrase/recombinase9e-0755.5
NC_020291:4357425:436516743651674366105939Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometyrosine recombinase XerC1e-0655.1
NC_015519:2489728:250341725034172504274858Tepidanaerobacter sp. Re1 chromosome, complete genomeintegrase family protein1e-0655.1
NC_015222:2683056:268358726835872684498912Nitrosomonas sp. AL212 chromosome, complete genometyrosine recombinase XerD1e-0655.1
NC_008536:435221:442656442656443567912Solibacter usitatus Ellin6076, complete genomephage integrase family protein1e-0655.1
NC_014933:220146:2444792444792456091131Bacteroides helcogenes P 36-108 chromosome, complete genomeintegrase family protein1e-0655.1
NC_014121:4299500:433131143313114332207897Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completesite-specific tyrosine recombinase XerD1e-0655.1
NC_012660:3320330:332033033203303321244915Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage integrase/recombinase1e-0655.1
NC_012881:3520956:352492435249243525847924Desulfovibrio salexigens DSM 2638, complete genomeintegrase family protein1e-0654.7
NC_015144:734726:753581753581754486906Weeksella virosa DSM 16922 chromosome, complete genomeTyrosine recombinase xerC1e-0654.7
NC_003228:2010643:203162020316202032504885Bacteroides fragilis NCTC 9343, complete genomeputative tyrosine recombinase2e-0654.7
NC_012781:2552723:255584125558412556761921Eubacterium rectale ATCC 33656, complete genomeintegrase/recombinase-like protein2e-0654.7
NC_020064:3825916:384373738437373844636900Serratia marcescens FGI94, complete genometyrosine recombinase XerD2e-0654.3
NC_015731:3077842:308153530815353082446912Nitrosomonas sp. Is79A3 chromosome, complete genomeTyrosine recombinase xerD2e-0654.3
NC_016612:477407:507534507534508430897Klebsiella oxytoca KCTC 1686 chromosome, complete genomesite-specific tyrosine recombinase XerD2e-0654.3
NC_003909:3606177:362138136213813622280900Bacillus cereus ATCC 10987, complete genometyrosine recombinase2e-0654.3
NC_018645:247917:252284252284252859576Desulfobacula toluolica Tol2, complete genometyrosine recombinase (Fragment)3e-0653.9
NC_016818:859181:859181859181860140960Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetyrosine recombinase XerD4e-0653.5
NC_014335:3589726:359683735968373597736900Bacillus cereus biovar anthracis str. CI chromosome, completetyrosine recombinase3e-0653.5
NC_005957:3665657:366765636676563668555900Bacillus thuringiensis serovar konkukian str. 97-27, completetyrosine recombinase3e-0653.5
NC_011969:3575988:357798735779873578886900Bacillus cereus Q1 chromosome, complete genomesite-specific tyrosine recombinase xerc3e-0653.5
NC_011658:3603009:363402836340283634927900Bacillus cereus AH187 chromosome, complete genomesite-specific tyrosine recombinase XerC3e-0653.5
NC_007530:3616828:364611036461103647009900Bacillus anthracis str. 'Ames Ancestor', complete genometyrosine recombinase5e-0653.1
NC_005945:3636321:364667836466783647577900Bacillus anthracis str. Sterne, complete genometyrosine recombinase5e-0653.1
NC_003997:3617000:364598336459833646882900Bacillus anthracis str. Ames, complete genometyrosine recombinase5e-0653.1
NC_012659:3617000:364601036460103646909900Bacillus anthracis str. A0248, complete genomesite-specific tyrosine recombinase XerC5e-0653.1
NC_014377:961259:973403973403974335933Thermosediminibacter oceani DSM 16646 chromosome, complete genomeintegrase family protein5e-0652.8
NC_002944:865425:888649888649889452804Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein6e-0652.8
NC_021184:4456904:446240944624094463341933Desulfotomaculum gibsoniae DSM 7213, complete genomesite-specific recombinase XerD7e-0652.8
NC_017208:4435573:447870544787054479703999Bacillus thuringiensis serovar chinensis CT-43 chromosome, completesite-specific tyrosine recombinase XerD7e-0652.4
NC_009437:2778061:278152927815292782389861Caldicellulosiruptor saccharolyticus DSM 8903, complete genomephage integrase family protein9e-0652