Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6116679 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6116679, End: 6117293, Length: 615

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:4312892:4334063433406343352141152Pseudomonas poae RE*1-1-14, complete genomephosphoglycerate mutase family protein3e-78290
NC_002947:4994335:504604150460415046667627Pseudomonas putida KT2440, complete genomephosphoglycerate mutase family protein9e-76282
NC_001263:1378605:139765613976561398369714Deinococcus radiodurans R1 chromosome 1, complete sequencephosphoglycerate mutase, putative1e-0653.1
NC_015437:1038476:104379310437931044422630Selenomonas sputigena ATCC 35185 chromosome, complete genomePhosphoglycerate mutase3e-0651.6
NC_018750:3741581:376592337659233766558636Streptomyces venezuelae ATCC 10712, complete genomeisomerase8e-0650.4