Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6111403 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6111403, End: 6112209, Length: 807

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009338:5537473:553875955387595539547789Mycobacterium gilvum PYR-GCK chromosome, complete genomehypothetical protein2e-86318
NC_014011:527681:530306530306531103798Aminobacterium colombiense DSM 12261 chromosome, complete genomeprotein of unknown function DUF14452e-82305
NC_009617:3184924:321069832106983211486789Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein6e-79293
NC_013522:736339:739573739573740376804Thermanaerovibrio acidaminovorans DSM 6589, complete genomeprotein of unknown function DUF14453e-78291
NC_010506:2146444:215491821549182155727810Shewanella woodyi ATCC 51908, complete genomeprotein of unknown function DUF14453e-61235
NC_018000:1877183:189216818921681892971804Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein7e-61233
NC_009952:592000:603311603311604093783Dinoroseobacter shibae DFL 12, complete genomeprotein of unknown function DUF14452e-57222
NC_014378:525717:533249533249533692444Acetohalobium arabaticum DSM 5501 chromosome, complete genomeprotein of unknown function DUF14453e-40165
NC_014915:2092678:213760321376032138016414Geobacillus sp. Y412MC52 chromosome, complete genomeprotein of unknown function DUF14452e-28126
NC_013411:2975364:299767229976722998085414Geobacillus sp. Y412MC61, complete genomeprotein of unknown function DUF14452e-28126