Pre_GI: BLASTP Hits

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Query: NC_004578:568236:568236 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 568236, End: 569312, Length: 1077

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014310:94645:1129571129571140421086Ralstonia solanacearum PSI07 megaplasmid, complete sequencehypothetical protein9e-68257
NC_003296:140889:1554331554331565181086Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSMEMBRANE PROTEIN8e-63241
NC_010678:114000:1285521285521296221071Ralstonia pickettii 12J chromosome 2, complete sequenceputative transmembrane protein1e-58227
NC_012857:557911:5723465723465734161071Ralstonia pickettii 12D chromosome 2, complete genomehypothetical protein1e-58227
NC_005085:1269787:1316968131696813180291062Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein1e-28127
NC_014752:131994:1375421375421386691128Neisseria lactamica ST-640, complete genomehypothetical protein9e-24111
NC_013508:1262333:1274329127432912753871059Edwardsiella tarda EIB202, complete genomehypothetical protein4e-1789
NC_010102:931055:9530849530849541421059Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-1685.5
NC_009436:2776410:2780797278079727818551059Enterobacter sp. 638, complete genomeinner membrane protein1e-1274.7
NC_011740:2072173:2077797207779720788641068Escherichia fergusonii ATCC 35469, complete genomeInner membrane protein yeeA1e-1274.3
NC_015663:4950000:4951967495196749530251059Enterobacter aerogenes KCTC 2190 chromosome, complete genomeinner membrane protein YeeA1e-1274.3
NC_013364:2612822:261318626131862613881696Escherichia coli O111:H- str. 11128, complete genome2e-1067