Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:5336773:5391079 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5391079, End: 5391924, Length: 846

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010002:4287439:429582142958214296624804Delftia acidovorans SPH-1, complete genomehypothetical protein1e-108392
NC_011979:3112911:311849231184923119310819Geobacter sp. FRC-32, complete genomehypothetical protein5e-86317
NC_016940:3632974:364036536403653641162798Saprospira grandis str. Lewin chromosome, complete genomeputative phage-like protein2e-68258
NC_010688:1192410:120799912079991208814816Xanthomonas campestris pv. campestris, complete genomehypothetical protein2e-59229
NC_011891:3369170:337755633775563378299744Anaeromyxobacter dehalogenans 2CP-1, complete genomehypothetical protein6e-54211
NC_011883:2826000:283193528319352832735801Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,hypothetical protein8e-40164