Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5372875 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5372875, End: 5374362, Length: 1488

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009434:608765:6593986593986607591362Pseudomonas stutzeri A1501, complete genomephage integrase family site specific recombinase3e-124445
NC_011753:1501868:1513240151324015147451506Vibrio splendidus LGP32 chromosome 1, complete genomeputative site-specific recombinase, phage integrase family1e-89330
NC_015554:3696970:3709043370904337105691527Alteromonas sp. SN2 chromosome, complete genomephage integrase family site specific recombinase6e-80298
NC_017187:1580988:1594050159405015954261377Arcobacter butzleri ED-1, complete genomeputative phage integrase1e-1894.7
NC_012856:2931995:2938769293876929401901422Ralstonia pickettii 12D chromosome 1, complete genomeintegrase family protein7e-1789.4
NC_015554:4724245:4730477473047747317691293Alteromonas sp. SN2 chromosome, complete genomebacteriophage integrase/recombinase9e-1788.6
NC_014323:4665610:4698545469854546998101266Herbaspirillum seropedicae SmR1 chromosome, complete genomebacteriophage integrase/recombinase1e-1688.6