Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5339568 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5339568, End: 5340179, Length: 612

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005966:2110549:212814621281462128739594Acinetobacter sp. ADP1, complete genomeputative threonine efflux protein5e-1994.4
NC_009255:2044291:206483920648392065417579Burkholderia vietnamiensis G4 chromosome 2, complete sequenceputative transmembrane protein5e-1167.8
NC_012880:1613485:162497016249701625578609Dickeya dadantii Ech703, complete genomehypothetical protein1e-1066.6
NC_012962:1068102:112095111209511121562612Photorhabdus asymbiotica, complete genomeputative transmembrane protein1e-1066.2
NC_010611:154307:175057175057175647591Acinetobacter baumannii ACICU, complete genomeputative threonine efflux protein4e-1064.7
NC_011586:164746:185574185574186164591Acinetobacter baumannii AB0057 chromosome, complete genomehypothetical protein4e-1064.7
NC_017171:155836:176668176668177258591Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomehypothetical protein4e-1064.7
NC_015381:1705383:172060117206011721185585Burkholderia gladioli BSR3 chromosome 1, complete sequenceLysine exporter protein LYSE/YGGA5e-0857.8
NC_009085:131000:151957151957152421465Acinetobacter baumannii ATCC 17978, complete genomehypothetical protein2e-0652.8
NC_007005:5127414:513539151353915136005615Pseudomonas syringae pv. syringae B728a, complete genomeunnamed protein product; similar to probable transmembrane protein8e-0650.4