Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5218247 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5218247, End: 5218624, Length: 378

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:167769216776921678069378Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein1e-59228
NC_009512:2108686:213377421337742134568795Pseudomonas putida F1, complete genomeprotein of unknown function DUF12644e-34143
NC_017986:4790482:483338548333854834056672Pseudomonas putida ND6 chromosome, complete genomehypothetical protein3e-33140
NC_013716:1618249:163585416358541636645792Citrobacter rodentium ICC168, complete genomehypothetical protein3e-1683.6