Pre_GI: BLASTP Hits

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Query: NC_004578:4708220:4724431 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4724431, End: 4725090, Length: 660

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013222:1898164:191055519105551911178624Robiginitalea biformata HTCC2501, complete genomehypothetical protein6e-28124
NC_010995:3821327:384757738475773848215639Cellvibrio japonicus Ueda107, complete genomehypothetical protein6e-1684.3
NC_018750:3661243:367233036723303673067738Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein4e-1271.6
NC_007435:1077792:107779210777921078427636Burkholderia pseudomallei 1710b chromosome II, complete sequenceIntegral membrane protein2e-1169.7
NC_006349:400807:419377419377420012636Burkholderia mallei ATCC 23344 chromosome 2, complete sequencehypothetical protein2e-1169.7
NC_008835:1827905:184952618495261850161636Burkholderia mallei NCTC 10229 chromosome I, complete sequencehypothetical protein2e-1169.7
NC_009079:402891:421569421569422204636Burkholderia mallei NCTC 10247 chromosome I, complete sequencehypothetical protein2e-1169.7
NC_007650:722961:741874741874742509636Burkholderia thailandensis E264 chromosome II, complete sequencehypothetical protein2e-1168.9
NC_010572:3925803:392748239274823928255774Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-1066.2