Pre_GI: BLASTP Hits

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Query: NC_004578:4432983:4443121 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4443121, End: 4444302, Length: 1182

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015856:3059737:3068580306858030697581179Collimonas fungivorans Ter331 chromosome, complete genomeretron reverse transcriptase3e-58226
NC_010501:3987615:4002391400239140035151125Pseudomonas putida W619, complete genomeRNA-directed DNA polymerase (reverse transcriptase)2e-47190
NC_014323:3292082:3299680329968033007141035Herbaspirillum seropedicae SmR1 chromosome, complete genomeretron reverse transcriptase5e-40165
NC_008781:1426285:143612114361211436630510Polaromonas naphthalenivorans CJ2, complete genomeretron reverse transcriptase1e-37157
NC_014910:242845:2767302767302777581029Alicycliphilus denitrificans BC chromosome, complete genomeretron reverse transcriptase4e-37155
NC_007963:1370903:1378303137830313793341032Chromohalobacter salexigens DSM 3043, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-36154
NC_013961:73037:834488344884434987Erwinia amylovora, complete genomeputative retron reverse transcriptase9e-37154
NC_013889:1514799:1529559152955915307431185Thioalkalivibrio sp. K90mix chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-34146
NC_013421:1505176:151274715127471513718972Pectobacterium wasabiae WPP163, complete genomeretron reverse transcriptase2e-32140
NC_008781:1426285:143545114354511436080630Polaromonas naphthalenivorans CJ2, complete genomeretron reverse transcriptase2e-23110
NC_011601:4036590:406150440615044062463960Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeRNA-directed DNA polymerase7e-1788.6
NC_012108:2159230:217027321702732171157885Desulfobacterium autotrophicum HRM2, complete genomeRNA-directed DNA polymerase (retron-type reverse transcriptase)1e-1687.8
NC_011750:4307166:4329863432986343310261164Escherichia coli IAI39 chromosome, complete genomeputative retron-type reverse transcriptase1e-1687.8
NC_015496:3256372:3267584326758432686031020Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA-directed DNA polymerase4e-1685.9
NC_017191:3901914:3912193391219339139561764Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA-directed DNA polymerase1e-1584.7
NC_017188:3900951:3910501391050139122641764Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA-directed DNA polymerase1e-1584.7
NC_010688:673454:6822916822916839851695Xanthomonas campestris pv. campestris, complete genomeRNA-directed DNA polymerase1e-1584.7
NC_011883:2826000:2832835283283528346191785Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,RNA-directed DNA polymerase2e-1480.5
NC_013194:634039:6422706422706439851716Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeRibonuclease H9e-1478.2
NC_020418:2868000:2883180288318028849131734Morganella morganii subsp. morganii KT, complete genomehypothetical protein1e-1377.8
NC_015510:4674774:4680972468097246832302259Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeRNA-directed DNA polymerase3e-1376.6
NC_002939:1480474:1491977149197714931191143Geobacter sulfurreducens PCA, complete genomeRNA-directed DNA polymerase1e-1274.3
NC_021066:3201500:321332732133273214196870Raoultella ornithinolytica B6, complete genomehypothetical protein2e-1273.9
NC_013959:83992:922959229593173879Sideroxydans lithotrophicus ES-1 chromosome, complete genomeputative reverse transcriptase3e-1273.6
NC_007086:2887875:2939736293973629409231188Xanthomonas campestris pv. campestris str. 8004, complete genomeRNA-directed DNA polymerase9e-1271.6
NC_006513:286549:2939752939752958941920Azoarcus sp. EbN1, complete genomeprobable RNA-directed DNA polymerase8e-1271.6
NC_009973:178000:2176542176542194081755Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeRNA-directed DNA polymerase2e-1170.5
NC_013440:1190832:1204684120468412063901707Haliangium ochraceum DSM 14365, complete genomeRibonuclease H3e-1170.1
NC_012947:2898179:290244829024482903410963Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRNA-directed DNA polymerase3e-1170.1
NC_007347:1:687068707844975Ralstonia eutropha JMP134 chromosome 1, complete sequenceRNA-directed DNA polymerase4e-1169.7
NC_003911:1078949:109420510942051095173969Silicibacter pomeroyi DSS-3, complete genomeRNA-dependent DNA polymerase, putative5e-1169.3
NC_013851:3142182:314937531493753150307933Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein9e-1168.2
NC_012880:3982383:399147739914773992475999Dickeya dadantii Ech703, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-1068.2
NC_009659:892272:9039629039629049751014Janthinobacterium sp. Marseille chromosome, complete genomeRNA-directed DNA polymerase2e-1067.4
NC_016026:2082500:2097240209724020990481809Micavibrio aeruginosavorus ARL-13 chromosome, complete genomereverse transcriptase family protein2e-1067.4
NC_020304:3029243:303402230340223034798777Desulfocapsa sulfexigens DSM 10523, complete genomeRetron-type reverse transcriptase2e-1067.4
NC_015635:5222000:523243052324305233401972Microlunatus phosphovorus NM-1, complete genomeputative RNA-directed DNA polymerase2e-1067
NC_012691:779826:7885707885707896011032Tolumonas auensis DSM 9187, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-1066.2
NC_007606:3784847:380768838076883808197510Shigella dysenteriae Sd197, complete genomeputative RNA-directed DNA polymerase, msDNA specific1e-0964.7
NC_016620:781995:784689784689785654966Bacteriovorax marinus SJ, complete genomereverse transcriptase1e-0964.3
NC_016818:1795576:1804158180415818059991842Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completereverse transcriptase2e-0963.9
NC_010334:609636:620220620220621074855Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-0963.5
NC_012660:2045398:2084638208463820857861149Pseudomonas fluorescens SBW25 chromosome, complete genomeputative RNA-directed DNA polymerase8e-0961.6
NC_012125:2826624:284537128453712846330960Salmonella enterica subsp. enterica serovar Paratyphi C strainreverse transcriptase-like protein6e-0858.9
NC_006905:2857699:286350128635012864460960Salmonella enterica subsp. enterica serovar Choleraesuis strreverse transcriptase-like protein6e-0858.9
NC_013406:303218:3125503125503142201671Paenibacillus sp. Y412MC10 chromosome, complete genomeRNA-directed DNA polymerase6e-0858.9
NC_012918:928903:9532789532789544111134Geobacter sp. M21 chromosome, complete genomeRNA-directed DNA polymerase2e-0757.8
NC_015164:2473496:2477601247760124790611461Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA-directed DNA polymerase9e-0651.6