Pre_GI: BLASTP Hits

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Query: NC_004578:4204235:4219432 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4219432, End: 4221204, Length: 1773

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2351464:2359159235915923609011743Pseudomonas mendocina NK-01 chromosome, complete genomeextracellular solute-binding protein0915
NC_015563:6167512:6183747618374761854801734Delftia sp. Cs1-4 chromosome, complete genomeextracellular solute-binding protein0829
NC_010002:1145951:1145951114595111476841734Delftia acidovorans SPH-1, complete genomeextracellular solute-binding protein, family 10829
NC_011992:392534:3925343925343942671734Acidovorax ebreus TPSY, complete genomeextracellular solute-binding protein0812
NC_008782:401667:4016674016674034001734Acidovorax sp. JS42, complete genomeextracellular solute-binding protein, family 10811
NC_007908:4069150:4090858409085840925911734Rhodoferax ferrireducens T118, complete genomeextracellular solute-binding protein, family 10796
NC_007347:2421942:2437098243709824388371740Ralstonia eutropha JMP134 chromosome 1, complete sequenceextracellular solute-binding protein, family 10791
NC_007645:1443296:1464373146437314661331761Hahella chejuensis KCTC 2396, complete genomeABC-type sugar transport system, periplasmic component0666
NC_013642:942767:9781219781219795451425Thermotoga naphthophila RKU-10, complete genomeextracellular solute-binding protein family 11e-32142
NC_018643:1309804:1326753132675313282911539Alpha proteobacterium HIMB5 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family1e-1791.7
NC_018644:637497:6461086461086474181311Alpha proteobacterium HIMB59 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family5e-1686.3
NC_009485:8187321:8204763820476382062231461Bradyrhizobium sp. BTAi1 chromosome, complete genomesugar ABC transporter periplasmic protein5e-1273.2
NC_018644:478077:4903404903404918661527Alpha proteobacterium HIMB59 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family6e-1273.2
NC_009828:1474970:1491131149113114924261296Thermotoga lettingae TMO, complete genomeextracellular solute-binding protein family 11e-1171.6
NC_014830:335380:3640853640853656921608Intrasporangium calvum DSM 43043 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family5e-1066.6
NC_013642:942767:9427679427679440771311Thermotoga naphthophila RKU-10, complete genomeextracellular solute-binding protein family 12e-0861.6
NC_015137:2616222:2668941266894126702721332Burkholderia sp. CCGE1001 chromosome 2, complete sequencefamily 1 extracellular solute-binding protein4e-0860.5
NC_018644:210627:2203982203982219151518Alpha proteobacterium HIMB59 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family2e-0757.8