Pre_GI: BLASTP Hits

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Query: NC_004578:3921199:3943355 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3943355, End: 3944215, Length: 861

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009725:3763922:377663537766353777504870Bacillus amyloliquefaciens FZB42, complete genomeIolH4e-112404
NC_020410:3755978:376883237688323769701870Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative sugar-phosphate epimerase/isomerase4e-112404
NC_016935:2567039:257668825766882577554867Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative sugar-phosphate epimerase/isomerase3e-106384
NC_013850:4829455:485862048586204859504885Klebsiella variicola At-22 chromosome, complete genomeXylose isomerase domain protein TIM barrel2e-83308
NC_013757:2858327:286040128604012861357957Geodermatophilus obscurus DSM 43160, complete genomeXylose isomerase domain protein TIM barrel4e-78291
NC_011886:1035500:103658110365811037456876Arthrobacter chlorophenolicus A6, complete genomeXylose isomerase domain protein TIM barrel5e-68257
NC_015177:2559903:2565527256552725671581632Pedobacter saltans DSM 12145 chromosome, complete genomeprotein of unknown function DUF10802e-0963.5
NC_013956:1810026:181878718187871819080294Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein9e-0857.8