Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:3193490:3232419 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3232419, End: 3235118, Length: 2700

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:478586:5033615033615060272667Pectobacterium wasabiae WPP163, complete genomeVirulence effector, SrfC3e-173609
NC_011757:2030631:2030631203063120332192589Methylobacterium chloromethanicum CM4, complete genomevirulence factor SrfC-like protein3e-74280
NC_016835:405482:4244004244004267752376Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,hypothetical protein7e-55216
NC_010694:1932126:1932126193212619345252400Erwinia tasmaniensis, complete genomePutative virulence factor3e-52207
NC_012214:2019000:2040105204010520425042400Erwinia pyrifoliae Ep1/96, complete genomePutative virulence factor2e-50201